Knowledge Resource Center for Ecological Environment in Arid Area
DOI | 10.1099/ijsem.0.002249 |
Sphingomonas jeddahensis sp nov., isolated from Saudi Arabian desert soil | |
Wuebbeler, Jan Hendrik1; Oppermann-Sanio, Fred Bernd1; Ockenfels, Andrea1; Roettig, Annika1; Osthaar-Ebker, Adena1; Verbarg, Susanne2; Poehlein, Anja3,4; Madkour, Mohamed H.5; Al-Ansari, Ahmed M.5; Almakishah, Naief H.5; Daniel, Rolf3,4; Steinbuechel, Alexander1,5 | |
通讯作者 | Steinbuechel, Alexander |
来源期刊 | INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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ISSN | 1466-5026 |
EISSN | 1466-5034 |
出版年 | 2017 |
卷号 | 67期号:10页码:4057-4063 |
英文摘要 | A novel Sphingomonas strain was isolated from a sample of desert soil collected near Jeddah in Saudi Arabia. A polyphasic approach was performed to characterize this strain, initially designated as G39(T). Cells of strain G39(T) are motile, Gramnegative, catalase-and oxidase-positive. The strain is able to grow aerobically at 20-35 degrees C, pH 6.5-8 and tolerates up to 4% (w/v) NaCl. Based on 16S rRNA gene sequence similarity, the closest relative type strains of G39(T) are Sphingomonas mucosissima DSM 17494(T)(98.6 %), S. dokdonensis DSM 21029(T) (98.4 %) and S. hankookensis DSM 23329(T) (97.4 %). Furthermore, the average nucleotide identities between the draft genome sequence of strain G39(T) and the genome sequences of all other available and related Sphingomonas species are significantly below the threshold of 94 %. The G+C content of the draft genome (3.12 Mbp) is 65.84 %. The prevalent (>5 %) cellular fatty acids of G39(T) were C-18 : 1 omega 7c, C-16 : 1 omega 7c and/ or C-16 : 1 omega 6c, C-14 : 0 2-OH and C-16 : 0. The only detectable respiratory quinone was ubiquinone-10 and the polar lipids profile is composed of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, sphingoglycolipid, as well as unidentified lipids, phospholipids and glycolipids. The results of the conducted polyphasic approach confirmed that this isolate represents a novel species of the genus Sphingomonas, for which the name Sphingomonas jeddahensis sp. nov. is proposed. The type strain of this species is G39(T) (= DSM 103790(T) = LMG 29955(T)). |
英文关键词 | Sphingomonas desert soil draft genome sequence |
类型 | Article |
语种 | 英语 |
国家 | Germany ; Saudi Arabia |
收录类别 | SCI-E |
WOS记录号 | WOS:000413484800058 |
WOS关键词 | EMENDED DESCRIPTION ; LIPID-COMPOSITION ; GEN-NOV ; BACTERIUM ; DATABASE ; PAUCIMOBILIS ; SEQUENCES ; AIR ; DNA |
WOS类目 | Microbiology |
WOS研究方向 | Microbiology |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/199841 |
作者单位 | 1.Westfal Wilhelms Univ Munster, Inst Mol Mikrobiol & Biotechnol, Corrensstr 3, D-48149 Munster, Germany; 2.Leibniz Inst DSMZ, German Collect Microorganisms & Cell Cultures, Inhoffenstr 7b, D-38124 Braunschweig, Germany; 3.Georg August Univ Gottingen, Dept Genom & Appl Microbiol, Inst Mikrobiol & Genet, Grisebachstr 8, D-37077 Gottingen, Germany; 4.Georg August Univ Gottingen, Gottingen Genom Lab, Inst Mikrobiol & Genet, Grisebachstr 8, D-37077 Gottingen, Germany; 5.King Abdulaziz Univ, Fac Meteorol Environm & Arid Land Agr, Environm Sci Dept, Jeddah 21589, Saudi Arabia |
推荐引用方式 GB/T 7714 | Wuebbeler, Jan Hendrik,Oppermann-Sanio, Fred Bernd,Ockenfels, Andrea,et al. Sphingomonas jeddahensis sp nov., isolated from Saudi Arabian desert soil[J],2017,67(10):4057-4063. |
APA | Wuebbeler, Jan Hendrik.,Oppermann-Sanio, Fred Bernd.,Ockenfels, Andrea.,Roettig, Annika.,Osthaar-Ebker, Adena.,...&Steinbuechel, Alexander.(2017).Sphingomonas jeddahensis sp nov., isolated from Saudi Arabian desert soil.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,67(10),4057-4063. |
MLA | Wuebbeler, Jan Hendrik,et al."Sphingomonas jeddahensis sp nov., isolated from Saudi Arabian desert soil".INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 67.10(2017):4057-4063. |
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