Arid
DOI10.1099/ijsem.0.002249
Sphingomonas jeddahensis sp nov., isolated from Saudi Arabian desert soil
Wuebbeler, Jan Hendrik1; Oppermann-Sanio, Fred Bernd1; Ockenfels, Andrea1; Roettig, Annika1; Osthaar-Ebker, Adena1; Verbarg, Susanne2; Poehlein, Anja3,4; Madkour, Mohamed H.5; Al-Ansari, Ahmed M.5; Almakishah, Naief H.5; Daniel, Rolf3,4; Steinbuechel, Alexander1,5
通讯作者Steinbuechel, Alexander
来源期刊INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
ISSN1466-5026
EISSN1466-5034
出版年2017
卷号67期号:10页码:4057-4063
英文摘要

A novel Sphingomonas strain was isolated from a sample of desert soil collected near Jeddah in Saudi Arabia. A polyphasic approach was performed to characterize this strain, initially designated as G39(T). Cells of strain G39(T) are motile, Gramnegative, catalase-and oxidase-positive. The strain is able to grow aerobically at 20-35 degrees C, pH 6.5-8 and tolerates up to 4% (w/v) NaCl. Based on 16S rRNA gene sequence similarity, the closest relative type strains of G39(T) are Sphingomonas mucosissima DSM 17494(T)(98.6 %), S. dokdonensis DSM 21029(T) (98.4 %) and S. hankookensis DSM 23329(T) (97.4 %). Furthermore, the average nucleotide identities between the draft genome sequence of strain G39(T) and the genome sequences of all other available and related Sphingomonas species are significantly below the threshold of 94 %. The G+C content of the draft genome (3.12 Mbp) is 65.84 %. The prevalent (>5 %) cellular fatty acids of G39(T) were C-18 : 1 omega 7c, C-16 : 1 omega 7c and/ or C-16 : 1 omega 6c, C-14 : 0 2-OH and C-16 : 0. The only detectable respiratory quinone was ubiquinone-10 and the polar lipids profile is composed of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, sphingoglycolipid, as well as unidentified lipids, phospholipids and glycolipids. The results of the conducted polyphasic approach confirmed that this isolate represents a novel species of the genus Sphingomonas, for which the name Sphingomonas jeddahensis sp. nov. is proposed. The type strain of this species is G39(T) (= DSM 103790(T) = LMG 29955(T)).


英文关键词Sphingomonas desert soil draft genome sequence
类型Article
语种英语
国家Germany ; Saudi Arabia
收录类别SCI-E
WOS记录号WOS:000413484800058
WOS关键词EMENDED DESCRIPTION ; LIPID-COMPOSITION ; GEN-NOV ; BACTERIUM ; DATABASE ; PAUCIMOBILIS ; SEQUENCES ; AIR ; DNA
WOS类目Microbiology
WOS研究方向Microbiology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/199841
作者单位1.Westfal Wilhelms Univ Munster, Inst Mol Mikrobiol & Biotechnol, Corrensstr 3, D-48149 Munster, Germany;
2.Leibniz Inst DSMZ, German Collect Microorganisms & Cell Cultures, Inhoffenstr 7b, D-38124 Braunschweig, Germany;
3.Georg August Univ Gottingen, Dept Genom & Appl Microbiol, Inst Mikrobiol & Genet, Grisebachstr 8, D-37077 Gottingen, Germany;
4.Georg August Univ Gottingen, Gottingen Genom Lab, Inst Mikrobiol & Genet, Grisebachstr 8, D-37077 Gottingen, Germany;
5.King Abdulaziz Univ, Fac Meteorol Environm & Arid Land Agr, Environm Sci Dept, Jeddah 21589, Saudi Arabia
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Wuebbeler, Jan Hendrik,Oppermann-Sanio, Fred Bernd,Ockenfels, Andrea,et al. Sphingomonas jeddahensis sp nov., isolated from Saudi Arabian desert soil[J],2017,67(10):4057-4063.
APA Wuebbeler, Jan Hendrik.,Oppermann-Sanio, Fred Bernd.,Ockenfels, Andrea.,Roettig, Annika.,Osthaar-Ebker, Adena.,...&Steinbuechel, Alexander.(2017).Sphingomonas jeddahensis sp nov., isolated from Saudi Arabian desert soil.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,67(10),4057-4063.
MLA Wuebbeler, Jan Hendrik,et al."Sphingomonas jeddahensis sp nov., isolated from Saudi Arabian desert soil".INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 67.10(2017):4057-4063.
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