Arid
DOI10.3389/fmicb.2017.02594
In Situ Field Sequencing and Life Detection in Remote (79 degrees 26 ’ N) Canadian High Arctic Permafrost Ice Wedge Microbial Communities
Goordial, J.1,2; Altshuler, Ianina1; Hindson, Katherine1; Chan-Yam, Kelly1; Marcolefas, Evangelos1; Whyte, Lyle G.1
通讯作者Goordial, J. ; Whyte, Lyle G.
来源期刊FRONTIERS IN MICROBIOLOGY
ISSN1664-302X
出版年2017
卷号8
英文摘要

Significant progress is being made in the development of the next generation of low cost life detection instrumentation with much smaller size, mass and energy requirements. Here, we describe in situ life detection and sequencing in the field in soils over laying ice wedges in polygonal permafrost terrain on Axel Heiberg Island, located in the Canadian high Arctic (79 degrees 26’N), an analog to the polygonal permafrost terrain observed on Mars. The life detection methods used here include (1) the cryo-iPlate for culturing microorganisms using diffusion of in situ nutrients into semi-solid media (2) a Microbial Activity Microassay (MAM) plate (BIOLOG Ecoplate) for detecting viable extant microorganisms through a colourimetric assay, and (3) the Oxford Nanopore MinION for nucleic acid detection and sequencing of environmental samples and the products of MAM plate and cryo-iPlate. We obtained 39 microbial isolates using the cryo-iPlate, which included several putatively novel strains based on the 16S rRNA gene, including a Pedobacter sp. (96% closest similarity in GenBank) which we partially genome sequenced using the MinION. The MAM plate successfully identified an active community capable of L-serine metabolism, which was used for metagenomic sequencing with the MinION to identify the active and enriched community. A metagenome on environmental ice wedge soil samples was completed, with base calling and uplink/downlink carried out via satellite internet. Validation of MinION sequencing using the Illumina MiSeq platform was consistent with the results obtained with the MinION. The instrumentation and technology utilized here is pre-existing, low cost, low mass, low volume, and offers the prospect of equipping micro-rovers and micro-penetrators with aggressive astrobiological capabilities. Since potentially habitable astrobiology targets have been identified (RSLs on Mars, near subsurface water ice on Mars, the plumes and oceans of Europa and Enceladus), future astrobiology missions will certainly target these areas and there is a need for direct life detection instrumentation.


英文关键词life detection astrobiology nanopore MinION polar microbiology permafrost
类型Article
语种英语
国家Canada ; USA
收录类别SCI-E
WOS记录号WOS:000418359000001
WOS关键词MARS ; TERRESTRIAL ; ENCELADUS ; DIVERSITY ; GENOMES ; ORIGIN ; DESERT ; SOILS ; OCEAN ; PLUME
WOS类目Microbiology
WOS研究方向Microbiology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/199064
作者单位1.McGill Univ, Dept Nat Resource Sci, Ste Anne De Bellevue, PQ, Canada;
2.Bigelow Lab Ocean Sci, East Boothbay, ME 04544 USA
推荐引用方式
GB/T 7714
Goordial, J.,Altshuler, Ianina,Hindson, Katherine,等. In Situ Field Sequencing and Life Detection in Remote (79 degrees 26 ’ N) Canadian High Arctic Permafrost Ice Wedge Microbial Communities[J],2017,8.
APA Goordial, J.,Altshuler, Ianina,Hindson, Katherine,Chan-Yam, Kelly,Marcolefas, Evangelos,&Whyte, Lyle G..(2017).In Situ Field Sequencing and Life Detection in Remote (79 degrees 26 ’ N) Canadian High Arctic Permafrost Ice Wedge Microbial Communities.FRONTIERS IN MICROBIOLOGY,8.
MLA Goordial, J.,et al."In Situ Field Sequencing and Life Detection in Remote (79 degrees 26 ’ N) Canadian High Arctic Permafrost Ice Wedge Microbial Communities".FRONTIERS IN MICROBIOLOGY 8(2017).
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