Arid
DOI10.3389/fmicb.2017.02083
Advanced Photogrammetry to Assess Lichen Colonization in the Hyper-Arid Namib Desert
Hinchcliffe, Graham1; Bollard-Breen, Barbara1; Cowan, Don A.2; Doshi, Ashray1; Gillman, Len N.1; Maggs-Kolling, Gillian3; de Los Rios, Asuncion4; Pointing, Stephen B.5
通讯作者de Los Rios, Asuncion ; Pointing, Stephen B.
来源期刊FRONTIERS IN MICROBIOLOGY
ISSN1664-302X
出版年2017
卷号8
英文摘要

The hyper-arid central region of the Namib Desert is characterized by quartz desert pavement terrain that is devoid of vascular plant covers. In this extreme habitat the only discernible surface covers are epilithic lichens that colonize exposed surfaces of quartz rocks. These lichens are highly susceptible to disturbance and so field surveys have been limited due to concerns about disturbing this unusual desert feature. Here we present findings that illustrate how non-destructive surveys based upon advanced photogrammetry techniques can yield meaningful and novel scientific data on these lichens. We combined ’structure from motion analysis,’ computer vision and GIS to create 3-dimensional point clouds from two-dimensional imagery. The data were robust in its application to estimating absolute lichen cover. An orange Stellarangia spp. assemblage had coverage of 22.8% of available substrate, whilst for a black Xanthoparmelia spp. assemblage coverage was markedly lower at 0.6% of available substrate. Hyperspectral signatures for both lichens were distinct in the near-infra red range indicating that Xanthoparmelia spp. was likely under relatively more moisture stress than Stellarangia spp. at the time of sampling, and we postulate that albedo effects may have contributed to this in the black lichen. Further transformation of the data revealed a colonization preference for west-facing quartz surfaces and this coincides with prevailing winds for marine fog that is the major source of moisture in this system. Furthermore, a three-dimensional ’fly through’ of the lichen habitat was created to illustrate how the application of computer vision in microbiology has further potential as a research and education tool. We discuss how advanced photogrammetry could be applied in astrobiology using autonomous rovers to add quantitative ecological data for visible surface colonization on the surface of Mars.


英文关键词astrobiology computer vision desert GIS lichen microbial ecology Namib Desert photogrammetry
类型Article
语种英语
国家New Zealand ; South Africa ; Namibia ; Spain ; Singapore
收录类别SCI-E
WOS记录号WOS:000413818600001
WOS关键词BIOLOGICAL SOIL CRUSTS ; ENVIRONMENTAL GRADIENTS ; ATACAMA DESERT ; OUTER-SPACE ; CHINA HOT ; MARS ; ECOSYSTEMS ; COMMUNITY ; LIFE ; DISTURBANCE
WOS类目Microbiology
WOS研究方向Microbiology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/199061
作者单位1.Auckland Univ Technol, Inst Appl Ecol New Zealand, Sch Sci, Auckland, New Zealand;
2.Univ Pretoria, Genom Res Inst, Pretoria, South Africa;
3.Gobabeb Res & Training Ctr, Gobabeb, Namibia;
4.Museo Nacl Ciencias Nat, Dept Biogeoquim & Ecol Microbiana, Madrid, Spain;
5.Natl Univ Singapore, Div Sci, Yale NUS Coll, Singapore, Singapore
推荐引用方式
GB/T 7714
Hinchcliffe, Graham,Bollard-Breen, Barbara,Cowan, Don A.,et al. Advanced Photogrammetry to Assess Lichen Colonization in the Hyper-Arid Namib Desert[J],2017,8.
APA Hinchcliffe, Graham.,Bollard-Breen, Barbara.,Cowan, Don A..,Doshi, Ashray.,Gillman, Len N..,...&Pointing, Stephen B..(2017).Advanced Photogrammetry to Assess Lichen Colonization in the Hyper-Arid Namib Desert.FRONTIERS IN MICROBIOLOGY,8.
MLA Hinchcliffe, Graham,et al."Advanced Photogrammetry to Assess Lichen Colonization in the Hyper-Arid Namib Desert".FRONTIERS IN MICROBIOLOGY 8(2017).
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