Arid
DOI10.7554/eLife.25783
The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization
Nelson, David R.1,2; Khraiwesh, Basel1,2; Fu, Weiqi1; Alseekh, Saleh3; Jaiswal, Ashish1; Chaiboonchoe, Amphun1; Hazzouri, Khaled M.2; O’Connor, Matthew J.4; Butterfoss, Glenn L.2; Drou, Nizar2; Rowe, Jillian D.2; Harb, Jamil3,5; Fernie, Alisdair R.3; Gunsalus, Kristin C.2,6,7; Salehi-Ashtiani, Kourosh1,2
通讯作者Nelson, David R. ; Salehi-Ashtiani, Kourosh
来源期刊ELIFE
ISSN2050-084X
出版年2017
卷号6
英文摘要

To investigate the phenomic and genomic traits that allow green algae to survive in deserts, we characterized a ubiquitous species, Chloroidium sp. UTEX 3007, which we isolated from multiple locations in the United Arab Emirates (UAE). Metabolomic analyses of Chloroidium sp. UTEX 3007 indicated that the alga accumulates a broad range of carbon sources, including several desiccation tolerance-promoting sugars and unusually large stores of palmitate. Growth assays revealed capacities to grow in salinities from zero to 60 g/L and to grow heterotrophically on >40 distinct carbon sources. Assembly and annotation of genomic reads yielded a 52.5 Mbp genome with 8153 functionally annotated genes. Comparison with other sequenced green algae revealed unique protein families involved in osmotic stress tolerance and saccharide metabolism that support phenomic studies. Our results reveal the robust and flexible biology utilized by a green alga to successfully inhabit a desert coastline.


类型Article
语种英语
国家U Arab Emirates ; Germany ; Palestine ; USA
收录类别SCI-E
WOS记录号WOS:000405378200001
WOS关键词MANGANESE CATALASE ; L-GLUCOSE ; DIACYLGLYCEROL ACYLTRANSFERASE ; PROTEIN ; TOLERANCE ; ENZYME ; DESICCATION ; EVOLUTION ; STRESS ; GENE
WOS类目Biology
WOS研究方向Life Sciences & Biomedicine - Other Topics
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/198578
作者单位1.New York Univ Abu Dhabi, Div Sci & Math, Lab Algal Synthet & Syst Biol, Abu Dhabi, U Arab Emirates;
2.New York Univ Abu Dhabi, Ctr Genom & Syst Biol, Abu Dhabi, U Arab Emirates;
3.Max Planck Inst Mol Plant Physiol, Potsdam, Germany;
4.New York Univ Abu Dhabi, Core Technol Platform, Abu Dhabi, U Arab Emirates;
5.Birzeit Univ, Dept Biol & Biochem, Birzeit, Palestine;
6.NYU, Ctr Genom & Syst Biol, New York, NY USA;
7.NYU, Dept Biol, New York, NY 10003 USA
推荐引用方式
GB/T 7714
Nelson, David R.,Khraiwesh, Basel,Fu, Weiqi,et al. The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization[J],2017,6.
APA Nelson, David R..,Khraiwesh, Basel.,Fu, Weiqi.,Alseekh, Saleh.,Jaiswal, Ashish.,...&Salehi-Ashtiani, Kourosh.(2017).The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization.ELIFE,6.
MLA Nelson, David R.,et al."The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization".ELIFE 6(2017).
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