Knowledge Resource Center for Ecological Environment in Arid Area
DOI | 10.1016/j.syapm.2016.03.007 |
Modestobacter caceresii sp nov., novel actinobacteria with an insight into their adaptive mechanisms for survival in extreme hyper-arid Atacama Desert soils | |
Busarakam, Kanungnid1; Bull, Alan T.2; Trujillo, Martha E.3; Riesco, Raul3; Sangal, Vartul4; van Wezel, Gilles P.5; Goodfellow, Michael1 | |
通讯作者 | Goodfellow, Michael |
来源期刊 | SYSTEMATIC AND APPLIED MICROBIOLOGY
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ISSN | 0723-2020 |
出版年 | 2016 |
卷号 | 39期号:4页码:243-251 |
英文摘要 | A polyphasic study was designed to determine the taxonomic provenance of three Modestobacter strains isolated from an extreme hyper-arid Atacama Desert soil. The strains, isolates KNN 45-1a, KNN 45-2b(T) and KNN 45-3b, were shown to have chemotaxonomic and morphological properties in line with their classification in the genus Modestobacter. The isolates had identical 16S rRNA gene sequences and formed a branch in the Modestobacter gene tree that was most closely related to the type strain of Modestobacter marinus (99.6% similarity). All three isolates were distinguished readily from Modestobacter type strains by a broad range of phenotypic properties, by qualitative and quantitative differences in fatty acid profiles and by BOX fingerprint patterns. The whole genome sequence of isolate KNN 45-2b(T) showed 89.3% average nucleotide identity, 90.1% (SD: 10.97%) average amino acid identity and a digital DNA-DNA hybridization value of 42.4 +/- 3.1 against the genome sequence of M. marinus DSM 45201(T), values consistent with its assignment to a separate species. On the basis of all of these data, it is proposed that the isolates be assigned to the genus Modestobacter as Modestobacter caceresii sp. nov. with isolate KNN 45-2b(T) (CECT 9023(T) = DSM 101691(T)) as the type strain. Analysis of the whole-genome sequence of M. caceresii KNN 45-2b(T), with 4683 open reading frames and a genome size of similar to 4.96 Mb, revealed the presence of genes and gene-clusters that encode for properties relevant to its adaptability to harsh environmental conditions prevalent in extreme hyper arid Atacama Desert soils. (C) 2016 Published by Elsevier GmbH. |
英文关键词 | Modestobacter caceserii Polyphasic taxonomy Whole genome sequence Hyper-arid Atacama Desert soil Average nucleotide identity Average amino acid identity |
类型 | Article |
语种 | 英语 |
国家 | England ; Spain ; Netherlands |
收录类别 | SCI-E |
WOS记录号 | WOS:000378665500004 |
WOS关键词 | GLYCINE BETAINE ; SELECTIVE ISOLATION ; SPECIES DEFINITION ; ESCHERICHIA-COLI ; GENOME SEQUENCE ; GENE CLUSTERS ; BACTERIAL ; IDENTIFICATION ; CHOLINE ; BIOSYNTHESIS |
WOS类目 | Biotechnology & Applied Microbiology ; Microbiology |
WOS研究方向 | Biotechnology & Applied Microbiology ; Microbiology |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/196614 |
作者单位 | 1.Newcastle Univ, Sch Biol, Newcastle Upon Tyne NE1 7RU, Tyne & Wear, England; 2.Univ Kent, Sch Biosci, Canterbury CT2 7NJ, Kent, England; 3.Univ Salamanca, Dept Microbiol & Genet, Campus Miguel de Unamuno, Salamanca 37007, Spain; 4.Northumbria Univ, Fac Hlth & Life Sci, Newcastle Upon Tyne NE1 8ST, Tyne & Wear, England; 5.Leiden Univ, Inst Pathol, Mol Biotechnol, POB 9505, NL-2300 RA Leiden, Netherlands |
推荐引用方式 GB/T 7714 | Busarakam, Kanungnid,Bull, Alan T.,Trujillo, Martha E.,et al. Modestobacter caceresii sp nov., novel actinobacteria with an insight into their adaptive mechanisms for survival in extreme hyper-arid Atacama Desert soils[J],2016,39(4):243-251. |
APA | Busarakam, Kanungnid.,Bull, Alan T..,Trujillo, Martha E..,Riesco, Raul.,Sangal, Vartul.,...&Goodfellow, Michael.(2016).Modestobacter caceresii sp nov., novel actinobacteria with an insight into their adaptive mechanisms for survival in extreme hyper-arid Atacama Desert soils.SYSTEMATIC AND APPLIED MICROBIOLOGY,39(4),243-251. |
MLA | Busarakam, Kanungnid,et al."Modestobacter caceresii sp nov., novel actinobacteria with an insight into their adaptive mechanisms for survival in extreme hyper-arid Atacama Desert soils".SYSTEMATIC AND APPLIED MICROBIOLOGY 39.4(2016):243-251. |
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