干旱区生态环境知识资源中心(Arid): Genome sequence and overview of Oligoflexus tunisiensis Shr3(T) in the eighth class Oligoflexia of the phylum Proteobacteria

Arid

DOI	10.1186/s40793-016-0210-6
	Genome sequence and overview of Oligoflexus tunisiensis Shr3(T) in the eighth class Oligoflexia of the phylum Proteobacteria
	Nakai, Ryosuke 1; Fujisawa, Takatomo 2; Nakamura, Yasukazu 2,3; Baba, Tomoya 1; Nishijima, Miyuki 4; Karray, Fatma 5; Sayadi, Sami 5; Isoda, Hiroko 6; Naganuma, Takeshi 7; Niki, Hironori 1,3
通讯作者	Nakai, Ryosuke
来源期刊	STANDARDS IN GENOMIC SCIENCES
ISSN	1944-3277
出版年	2016
卷号	11
英文摘要	Oligoflexus tunisiensis Shr3(T) is the first strain described in the newest (eighth) class Oligoflexia of the phylum Proteobacteria. This strain was isolated from the 0.2-mu m filtrate of a suspension of sand gravels collected in the Sahara Desert in the Republic of Tunisia. The genome of O. tunisiensis Shr3(T) is 7,569,109 bp long and consists of one scaffold with a 54.3% G + C content. A total of 6,463 genes were predicted, comprising 6,406 protein-coding and 57 RNA genes. Genome sequence analysis suggested that strain Shr3(T) had multiple terminal oxidases for aerobic respiration and various transporters, including the resistance-nodulation-cell division-type efflux pumps. Additionally, gene sequences related to the incomplete denitrification pathway lacking the final step to reduce nitrous oxide (N2O) to nitrogen gas (N-2) were found in the O. tunisiensis Shr3(T) genome. The results presented herein provide insight into the metabolic versatility and N2O producing activity of Oligoflexus species.
英文关键词	Oligoflexia Proteobacteria RND-type efflux pump Denitrification Nitrous oxide (N2O)
类型	Article
语种	英语
国家	Japan ; Tunisia
收录类别	SCI-E
WOS记录号	WOS:000392976100002
WOS关键词	ANNOTATIONS ; PHYLOGENY ; BACTERIA ; PROPOSAL ; LINEAGE ; SYSTEM ; OXIDE ; NOV. ; TOOL
WOS类目	Genetics & Heredity ; Microbiology
WOS研究方向	Genetics & Heredity ; Microbiology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/196562
作者单位	1.Natl Inst Genet, Genet Strains Res Ctr, 1111 Yata, Mishima, Shizuoka 4118540, Japan; 2.Natl Inst Genet, Ctr Informat Biol, 1111 Yata, Mishima, Shizuoka 4118540, Japan; 3.Grad Univ Adv Studies SOKENDAI, Dept Genet, 1111 Yata, Mishima, Shizuoka 4118540, Japan; 4.TechnoSuruga Lab Co Ltd, Tech Dept, Shimizu Ku, 330 Nagasaki, Shizuoka 330, Japan; 5.Univ Sfax, Ctr Biotechnol Sfax, Route Sidi Mansour,Km 6,BP 1177, Sfax 3018, Tunisia; 6.Univ Tsukuba, Alliance Res North Africa ARENA, 1-1-1 Tennoudai, Tsukuba, Ibaraki 3058572, Japan; 7.Hiroshima Univ, Grad Sch Biosphere Sci, 1-4-4 Kagamiyama, Higashihiroshima 7398528, Japan
推荐引用方式 GB/T 7714	Nakai, Ryosuke,Fujisawa, Takatomo,Nakamura, Yasukazu,et al. Genome sequence and overview of Oligoflexus tunisiensis Shr3(T) in the eighth class Oligoflexia of the phylum Proteobacteria[J],2016,11.
APA	Nakai, Ryosuke.,Fujisawa, Takatomo.,Nakamura, Yasukazu.,Baba, Tomoya.,Nishijima, Miyuki.,...&Niki, Hironori.(2016).Genome sequence and overview of Oligoflexus tunisiensis Shr3(T) in the eighth class Oligoflexia of the phylum Proteobacteria.STANDARDS IN GENOMIC SCIENCES,11.
MLA	Nakai, Ryosuke,et al."Genome sequence and overview of Oligoflexus tunisiensis Shr3(T) in the eighth class Oligoflexia of the phylum Proteobacteria".STANDARDS IN GENOMIC SCIENCES 11(2016).