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DOI | 10.1080/00268976.2016.1170220 |
QM/MM simulation of the amide-I band in the Raman spectrum of insulin | |
Tah, Bidisha1; Dutta, Debodyuti2; Pal, Prabir1; Talapatra, G. B.1; Mishra, Sabyashachi2 | |
通讯作者 | Mishra, Sabyashachi |
来源期刊 | MOLECULAR PHYSICS
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ISSN | 0026-8976 |
EISSN | 1362-3028 |
出版年 | 2016 |
卷号 | 114期号:12页码:1939-1951 |
英文摘要 | Raman spectroscopy is an effective tool to detect conformational changes arid secoridaey structures’ of biological molecules. The, amide-1 band representing the amide carbonyl (C=-0 stretching, with smaller contributions of C--N stretching and N-H bending is a signature band for protein secondary structure conformation. We have simulated the Raman spectra of insulin by a hybrid quantum mechanics and molecular-mechanics (QM/PAM) method with an aim to provide an accurate descrip tion of the amide-1 barid. To fulfil this aim we have considered three different QM/MM models with increasingly accurate description of the electrostatic environment for tyrosine (YR), phenylalanirie (PHE) and cystine (CYS) residues of insulin. All three models successfully describe the experimenal Rarnan spectral features associated with the vibrational modes of the amino acid side chains However, an accurate simulation of the amide-I band is achieved only in one of the three models, where the peptide backbone atoms together with its hycirogeri boridingpartners are treated with OM method. This work indicates that the accurate treatment of electrostatic interactions of the pep de backbone is crucial for correct simulation of the amide-1 region, which acts as a spectral signature of proteins. |
英文关键词 | Insulin Raman spectra QM/MM simulation amide-I band |
类型 | Article |
语种 | 英语 |
国家 | India |
收录类别 | SCI-E |
WOS记录号 | WOS:000376868500012 |
WOS关键词 | AROMATIC-AMINO-ACIDS ; SECONDARY STRUCTURE ; INFRARED-SPECTROSCOPY ; VIBRATIONAL FREQUENCIES ; BOVINE INSULIN ; PROTEINS ; TYROSINE ; SCATTERING ; RESONANCE ; SURFACE |
WOS类目 | Chemistry, Physical ; Physics, Atomic, Molecular & Chemical |
WOS研究方向 | Chemistry ; Physics |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/195120 |
作者单位 | 1.Indian Assoc Cultivat Sci, Dept Spect, Kolkata, India; 2.Indian Inst Technol Kharagpur, Dept Chem, Kharagpur, W Bengal, India |
推荐引用方式 GB/T 7714 | Tah, Bidisha,Dutta, Debodyuti,Pal, Prabir,et al. QM/MM simulation of the amide-I band in the Raman spectrum of insulin[J],2016,114(12):1939-1951. |
APA | Tah, Bidisha,Dutta, Debodyuti,Pal, Prabir,Talapatra, G. B.,&Mishra, Sabyashachi.(2016).QM/MM simulation of the amide-I band in the Raman spectrum of insulin.MOLECULAR PHYSICS,114(12),1939-1951. |
MLA | Tah, Bidisha,et al."QM/MM simulation of the amide-I band in the Raman spectrum of insulin".MOLECULAR PHYSICS 114.12(2016):1939-1951. |
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