Arid
DOI10.1080/00268976.2016.1170220
QM/MM simulation of the amide-I band in the Raman spectrum of insulin
Tah, Bidisha1; Dutta, Debodyuti2; Pal, Prabir1; Talapatra, G. B.1; Mishra, Sabyashachi2
通讯作者Mishra, Sabyashachi
来源期刊MOLECULAR PHYSICS
ISSN0026-8976
EISSN1362-3028
出版年2016
卷号114期号:12页码:1939-1951
英文摘要

Raman spectroscopy is an effective tool to detect conformational changes arid secoridaey structures’ of biological molecules. The, amide-1 band representing the amide carbonyl (C=-0 stretching, with smaller contributions of C--N stretching and N-H bending is a signature band for protein secondary structure conformation. We have simulated the Raman spectra of insulin by a hybrid quantum mechanics and molecular-mechanics (QM/PAM) method with an aim to provide an accurate descrip tion of the amide-1 barid. To fulfil this aim we have considered three different QM/MM models with increasingly accurate description of the electrostatic environment for tyrosine (YR), phenylalanirie (PHE) and cystine (CYS) residues of insulin. All three models successfully describe the experimenal Rarnan spectral features associated with the vibrational modes of the amino acid side chains However, an accurate simulation of the amide-I band is achieved only in one of the three models, where the peptide backbone atoms together with its hycirogeri boridingpartners are treated with OM method. This work indicates that the accurate treatment of electrostatic interactions of the pep de backbone is crucial for correct simulation of the amide-1 region, which acts as a spectral signature of proteins.


英文关键词Insulin Raman spectra QM/MM simulation amide-I band
类型Article
语种英语
国家India
收录类别SCI-E
WOS记录号WOS:000376868500012
WOS关键词AROMATIC-AMINO-ACIDS ; SECONDARY STRUCTURE ; INFRARED-SPECTROSCOPY ; VIBRATIONAL FREQUENCIES ; BOVINE INSULIN ; PROTEINS ; TYROSINE ; SCATTERING ; RESONANCE ; SURFACE
WOS类目Chemistry, Physical ; Physics, Atomic, Molecular & Chemical
WOS研究方向Chemistry ; Physics
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/195120
作者单位1.Indian Assoc Cultivat Sci, Dept Spect, Kolkata, India;
2.Indian Inst Technol Kharagpur, Dept Chem, Kharagpur, W Bengal, India
推荐引用方式
GB/T 7714
Tah, Bidisha,Dutta, Debodyuti,Pal, Prabir,et al. QM/MM simulation of the amide-I band in the Raman spectrum of insulin[J],2016,114(12):1939-1951.
APA Tah, Bidisha,Dutta, Debodyuti,Pal, Prabir,Talapatra, G. B.,&Mishra, Sabyashachi.(2016).QM/MM simulation of the amide-I band in the Raman spectrum of insulin.MOLECULAR PHYSICS,114(12),1939-1951.
MLA Tah, Bidisha,et al."QM/MM simulation of the amide-I band in the Raman spectrum of insulin".MOLECULAR PHYSICS 114.12(2016):1939-1951.
条目包含的文件
条目无相关文件。
个性服务
推荐该条目
保存到收藏夹
导出为Endnote文件
谷歌学术
谷歌学术中相似的文章
[Tah, Bidisha]的文章
[Dutta, Debodyuti]的文章
[Pal, Prabir]的文章
百度学术
百度学术中相似的文章
[Tah, Bidisha]的文章
[Dutta, Debodyuti]的文章
[Pal, Prabir]的文章
必应学术
必应学术中相似的文章
[Tah, Bidisha]的文章
[Dutta, Debodyuti]的文章
[Pal, Prabir]的文章
相关权益政策
暂无数据
收藏/分享

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。