Arid
DOI10.1007/s12275-016-6361-8
Deinococcus sedimenti sp nov isolated from river sediment
Lee, Jae-Jin1; Lee, Yeon-Hee1; Park, Su-Jin1; Lim, Sangyong2; Jeong, Sun-Wook2; Lee, Seung-Yeol1; Park, Sangkyu1; Choi, Hyo-Won3; Kim, Myung Kyum4; Jung, Hee-Young1,5
通讯作者Jung, Hee-Young
来源期刊JOURNAL OF MICROBIOLOGY
ISSN1225-8873
EISSN1976-3794
出版年2016
卷号54期号:12页码:802-808
英文摘要

A novel Gram-positive, oval-shaped, non-motile bacterium designated strain 16F1L(T) was isolated from sediment collected from the Han River in Seoul, Republic of Korea. Based on the 16S rRNA gene sequence (1,448 bp), this strain was identified as a member of the genus Deinococcus that belongs to the class Deinococci. Similarities in the 16S rRNA gene sequence were shown with Deinococcus daejeonensis MJ27(T) (99.0%), D. grandis DSM 3963(T) (98.1%), D. radiotolerans C1(T) (97.5%), and D. caeni Ho-08(T) (97.2%). Strain 16F1L(T) was classified as a different genomic species from closely related Deinococcus members, based on less than 70% DNA-DNA relatedness. Genomic DNA G+C content of strain 16F1L(T) was 67.2 mol%. Strain 16F1L(T) was found to grow at temperatures of 10-37A degrees C (optimum 25A degrees C) and pH 7-8 (optimum pH 7) on R2A medium, and was catalase-positive and oxidase-negative. Strain 16F1L(T) showed resistance to gamma radiation (D-10 > 2 kGy). In addition, this strain had the following chemotaxonomic characteristics: the major fatty acids were C-15:1 omega 6c and C-16:1 omega 7c; the polar lipid profile contained phosphoglycolipids, unknown aminophospholipids, an unknown aminoglycolipid, unknown aminolipids, an unknown glycolipid, an unknown phospholipid, and an unknown polar lipid; the major quinone was MK-8. Phylogenetic, genotypic, phenotypic, and chemotaxonomic characteristics indicated that strain 16F1L(T) represents a novel species within the genus Deinococcus, for which the name Deinococcus sedimenti sp. nov. is proposed. The type strain is 16F1L(T) (=KCTC 33796(T) =JCM 31405(T)).


英文关键词Deinococcus polyphasic taxonomy Gamma radiation-resistance
类型Article
语种英语
国家South Korea
收录类别SCI-E
WOS记录号WOS:000388991900003
WOS关键词PERFORMANCE LIQUID-CHROMATOGRAPHY ; DEOXYRIBONUCLEIC-ACID ; IONIZING-RADIATION ; ACTIVATED-SLUDGE ; DESERT SOIL ; GEN-NOV ; BACTERIUM ; AMPLIFICATION ; RADIODURANS ; DIVERSITY
WOS类目Microbiology
WOS研究方向Microbiology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/194626
作者单位1.Kyungpook Natl Univ, Sch Appl Biosci, Daegu 41566, South Korea;
2.Korea Atom Energy Res Inst, Radiat Res Div Biotechnol, Jeongeup 56212, South Korea;
3.RDA, Natl Inst Agr Sci, Wonju 55365, South Korea;
4.Seoul Womens Univ, Dept Bio & Environm Technol, Coll Nat Sci, Seoul 01797, South Korea;
5.Kyungpook Natl Univ, Inst Plant Med, Daegu 41566, South Korea
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GB/T 7714
Lee, Jae-Jin,Lee, Yeon-Hee,Park, Su-Jin,et al. Deinococcus sedimenti sp nov isolated from river sediment[J],2016,54(12):802-808.
APA Lee, Jae-Jin.,Lee, Yeon-Hee.,Park, Su-Jin.,Lim, Sangyong.,Jeong, Sun-Wook.,...&Jung, Hee-Young.(2016).Deinococcus sedimenti sp nov isolated from river sediment.JOURNAL OF MICROBIOLOGY,54(12),802-808.
MLA Lee, Jae-Jin,et al."Deinococcus sedimenti sp nov isolated from river sediment".JOURNAL OF MICROBIOLOGY 54.12(2016):802-808.
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