Knowledge Resource Center for Ecological Environment in Arid Area
DOI | 10.3389/fmicb.2016.00150 |
The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity | |
Fonseca-Garcia, Citlali1; Coleman-Derr, Devin2,3,4; Garrido, Etzel1,6; Visel, Axel2,3,5; Tringe, Susannah G.2,3,5; Partida-Martinez, Laila P.1 | |
通讯作者 | Partida-Martinez, Laila P. |
来源期刊 | FRONTIERS IN MICROBIOLOGY
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ISSN | 1664-302X |
出版年 | 2016 |
卷号 | 7 |
英文摘要 | Cactaceae represents one of the most species-rich families of succulent plants native to arid and semi-arid ecosystems, yet the associations Cacti establish with microorganisms and the rules governing microbial community assembly remain poorly understood. We analyzed the composition, diversity, and factors influencing above- and below-ground bacterial, archaeal, and fungal communities associated with two native and sympatric Cacti species: Myrtillocactus geometrizans and Opuritia robusta. Phylogenetic profiling showed that the composition and assembly of microbial communities associated with Cacti were primarily influenced by the plant compartment; plant species, site, and season played only a minor role. Remarkably, bacterial, and archaeal diversity was higher in the phyllosphere than in the rhizosphere of Cacti, while the opposite was true for fungi. Semi-arid soils exhibited the highest levels of microbial diversity whereas the stem endosphere the lowest. Despite their taxonomic distance, M. geometrizans and O. robusta shared most microbial taxa in all analyzed compartments. Influence of the plant host did only play a larger role in the fungal communities of the stem endosphere. These results suggest that fungi establish specific interactions with their host plant inside the stem, whereas microbial communities in the other plant compartments may play similar functional roles in these two species. Biochemical and molecular characterization of seed-borne bacteria of Cacti supports the idea that these microbial symbionts may be vertically inherited and could promote plant growth and drought tolerance for the fitness of the Cacti holobiont. We envision this knowledge will help improve and sustain agriculture in arid and semi-arid regions of the world. |
英文关键词 | arid and semi-arid ecosystems Cactaceae CAM plants holobiont Illumina amplicon sequencing microbial diversity microbiomes plant-microbe interactions |
类型 | Article |
语种 | 英语 |
国家 | Mexico ; USA |
收录类别 | SCI-E |
WOS记录号 | WOS:000369946600001 |
WOS关键词 | BACTERIAL ROOT MICROBIOTA ; WEATHERING DESERT PLANTS ; ENDOPHYTIC BACTERIA ; RHIZOSPHERE MICROBIOME ; COMMUNITY STRUCTURE ; FUNGAL ENDOPHYTES ; GROWTH PROMOTION ; DIVERSITY ; SOIL ; POPULATIONS |
WOS类目 | Microbiology |
WOS研究方向 | Microbiology |
来源机构 | University of California, Berkeley |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/193047 |
作者单位 | 1.Ctr Invest & Estudios Avanzados, Dept Ingn Genet, Irapuato, Mexico; 2.Joint Genome Inst, Dept Energy, Walnut Creek, CA USA; 3.Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Environm Genom & Syst Biol Div, Berkeley, CA 94720 USA; 4.ARS, Ctr Plant Gene Express, USDA, Albany, CA USA; 5.Univ Calif Merced, Sch Nat Sci, Mol Cell Biol, Merced, CA USA; 6.Cornell Univ, Dept Entomol, Ithaca, NY 14853 USA |
推荐引用方式 GB/T 7714 | Fonseca-Garcia, Citlali,Coleman-Derr, Devin,Garrido, Etzel,et al. The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity[J]. University of California, Berkeley,2016,7. |
APA | Fonseca-Garcia, Citlali,Coleman-Derr, Devin,Garrido, Etzel,Visel, Axel,Tringe, Susannah G.,&Partida-Martinez, Laila P..(2016).The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity.FRONTIERS IN MICROBIOLOGY,7. |
MLA | Fonseca-Garcia, Citlali,et al."The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity".FRONTIERS IN MICROBIOLOGY 7(2016). |
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