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We evaluated the response to sea level rise and climatic changes of the northeastern Caribbean by establishing a palaeoenvironmental reconstruction of the Flamenco Lagoon, located in the coastal side of the Guanica Dry Forest, a MAB/UNESCO reserve in the semi-arid southwestern coast of Puerto Rico (17 degrees 57’10.31"N, 66 degrees 50’39.30"W). The reconstruction was based on pollen records, sediments analysis, delta C-13, delta N-15, C/N data and AMS C-14 dating of one sediment core. The geology of the area is rocky calcareous karst with rocky outcrops and canyons, with intermittent streams that move water during periods of high run-off conditions. The present lagoon is surrounded by rocky outcrops where dry forest vegetation is present on the terrestrial sides, and sand dunes on the coastal side. We propose that the studied lagoon developed after the stabilization of sea level rise in the region following three main stages: (1) before similar to 5400 cal yr BP, sediments were accumulated according to small channels dynamics and trees, shrubs and herbs were present. The sedimentary organic matter was mainly sourced from terrestrial C-3 and C-4 plants. (2) Between similar to 5400 and similar to 4400 cal yr BP, tidal flats were established and mangroves, mainly represented by Rhizophora trees, migrated landward with sea level rise and established in the area, and the sedimentary organic matter was sourced from terrestrial C-3 plants. (3) Around 4400 cal yr BP, sea level was near the stabilization, the endorheic minibasin was closed when a coastal sand dune was established as a result of drier climatic conditions. Mangroves were eliminated from the system as a result of the closure of the area by sand dunes and increased salinity in water due to high evaporative demand of the climate. The pollen dominance of herbaceous and shrubby vegetation prevails until present Throughout the lagoon development, sedimentary organic matter was sourced from C-3 and C-4 plants, as well as phytoplankton organic matter. The closure of the lagoon and the drier conditions prevalent in the region during the late Holocene, which lasts until the present day, and increased the contribution of salinity tolerant phytoplankton that characterizes the current conditions of the Flamenco Lagoon. (C) 2016 Elsevier B.V. All rights reserved.