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DOI10.1371/journal.pone.0128563
Generation of a Transcriptome in a Model Lepidopteran Pest, Heliothis virescens, Using Multiple Sequencing Strategies for Profiling Midgut Gene Expression
Perera, Omaththage P.1; Shelby, Kent S.2; Popham, Holly J. R.2; Gould, Fred3; Adang, Michael J.4; Jurat-Fuentes, Juan Luis5
通讯作者Perera, Omaththage P.
来源期刊PLOS ONE
ISSN1932-6203
出版年2015
卷号10期号:6
英文摘要

Heliothine pests such as the tobacco budworm, Heliothis virescens (F.), pose a significant threat to production of a variety of crops and ornamental plants and are models for developmental and physiological studies. The efforts to develop new control measures for H. virescens, as well as its use as a relevant biological model, are hampered by a lack of molecular resources. The present work demonstrates the utility of next-generation sequencing technologies for rapid molecular resource generation from this species for which lacks a sequenced genome. In order to amass a de novo transcriptome for this moth, transcript sequences generated from Illumina, Roche 454, and Sanger sequencing platforms were merged into a single de novo transcriptome assembly. This pooling strategy allowed a thorough sampling of transcripts produced under diverse environmental conditions, developmental stages, tissues, and infections with entomopathogens used for biological control, to provide the most complete transcriptome to date for this species. Over 138 million reads from the three platforms were assembled into the final set of 63,648 contigs. Of these, 29,978 had significant BLAST scores indicating orthologous relationships to transcripts of other insect species, with the top-hit species being the monarch butterfly (Danaus plexippus) and silkworm (Bombyx mori). Among identified H. virescens orthologs were immune effectors, signal transduction pathways, olfactory receptors, hormone biosynthetic pathways, peptide hormones and their receptors, digestive enzymes, and insecticide resistancgenomics and for new biological experimentation needed to develop efficient control efforts for this and related Noctuid pest moths.e enzymes. As an example, we demonstrate the utility of this transcriptomic resource to study gene expression profiling of larval midguts and detect transcripts of putative Bacillus thuringiensis (Bt) Cry toxin receptors. The substantial molecular resources described in this study will facilitate development of H. virescens as a relevant biological model for functional


类型Article
语种英语
国家USA
收录类别SCI-E
WOS记录号WOS:000355652200079
WOS关键词BACILLUS-THURINGIENSIS CRY1A ; ALKALINE-PHOSPHATASE CDNA ; AMINOPEPTIDASE-N ; BINDING-PROTEINS ; COTTON BOLLWORM ; DESERT LOCUST ; INNATE IMMUNE ; RNA-SEQ ; INSECT ; RESISTANCE
WOS类目Multidisciplinary Sciences
WOS研究方向Science & Technology - Other Topics
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/189789
作者单位1.ARS, Southern Insect Management Res Unit, USDA, Stoneville, MS 38776 USA;
2.ARS, USDA, Biol Control Insects Res Lab, Columbia, MO 65203 USA;
3.N Carolina State Univ, Dept Entomol, Raleigh, NC 27607 USA;
4.Univ Georgia, Dept Entomol, Athens, GA 30602 USA;
5.Univ Tennessee, Dept Entomol & Plant Pathol, Knoxville, TN 37996 USA
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Perera, Omaththage P.,Shelby, Kent S.,Popham, Holly J. R.,et al. Generation of a Transcriptome in a Model Lepidopteran Pest, Heliothis virescens, Using Multiple Sequencing Strategies for Profiling Midgut Gene Expression[J],2015,10(6).
APA Perera, Omaththage P.,Shelby, Kent S.,Popham, Holly J. R.,Gould, Fred,Adang, Michael J.,&Jurat-Fuentes, Juan Luis.(2015).Generation of a Transcriptome in a Model Lepidopteran Pest, Heliothis virescens, Using Multiple Sequencing Strategies for Profiling Midgut Gene Expression.PLOS ONE,10(6).
MLA Perera, Omaththage P.,et al."Generation of a Transcriptome in a Model Lepidopteran Pest, Heliothis virescens, Using Multiple Sequencing Strategies for Profiling Midgut Gene Expression".PLOS ONE 10.6(2015).
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