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This work explores the impact of the development of global meridional and zonal sea surface temperature (SST) gradients on the Mediterranean runoff variability during the Plio-Pleistocene transition, about 3Ma. Results show that total annual mean Pliocene Mediterranean runoff is about 40% larger than during the preindustrial period due to more increased extratropical specific humidity. As a consequence of a weakened and extended Hadley cell, the Pliocene northwest Africa hydrological network produces a discharge 30 times larger than today. Our results support the conclusion that during the Pliocene, the Mediterranean water deficit was reduced relative to today due to a larger river discharge. By means of a stand-alone atmospheric general circulation model, we simulate the separate impact of extratropical and equatorial SST cooling on the Mediterranean runoff. While cooling the equatorial SST does not imply significant changes to the Pliocene Mediterranean hydrological budget, the extratropical SST cooling increases the water deficit due to a decrease in precipitation and runoff. Consequently, river discharge from this area reduces to preindustrial levels. The main teleconnections acting upon the Mediterranean area today, i.e., the North Atlantic Oscillation during winter and the monsoon-desert mechanism during summer already have a large influence on the climate of our Pliocene simulations. Finally, our results also suggest that in a climate state significantly warmer than today, changes of the Hadley circulation could potentially lead to increased water resources in northwest Africa.