Knowledge Resource Center for Ecological Environment in Arid Area
DOI | 10.5194/acp-15-6183-2015 |
Arctic microbial and next-generation sequencing approach for bacteria in snow and frost flowers: selected identification, abundance and freezing nucleation | |
Mortazavi, R.1; Attiya, S.2,3; Ariya, P. A.4 | |
通讯作者 | Ariya, P. A. |
来源期刊 | ATMOSPHERIC CHEMISTRY AND PHYSICS
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ISSN | 1680-7316 |
EISSN | 1680-7324 |
出版年 | 2015 |
卷号 | 15期号:11页码:6183-6204 |
英文摘要 | During the spring of 2009, as part of the Ocean-Atmosphere-Sea Ice-Snowpack (OASIS) campaign in Barrow, Alaska, USA, we examined the identity, population diversity, freezing nucleation ability of the microbial communities of five different snow types and frost flowers. In addition to the culturing and gene-sequence-based identification approach, we utilized a state-of-the-art genomic next-generation sequencing (NGS) technique to examine the diversity of bacterial communities in Arctic samples. Known phyla or candidate divisions were detected (11-18) with the majority of sequences (12.3-83.1 %) belonging to one of the five major phyla: Proteobacteria, Actinobacteria, Bacteroidetes, Firmicutes, and Cyanobacteria. The number of genera detected ranged from, 101-245. The highest number of cultivable bacteria was observed in frost flowers (FFs) and accumulated snow (AS) with 325 +/- 35 and 314 +/- 142 CFUmL(-1), respectively; and for cultivable fungi 5 +/- 1 CFUmL(-1) in windpack (WP) and blowing snow (BS). Morphology/elemental composition and ice-nucleating abilities of the identified taxa were obtained using high resolution electron microscopy with energy-dispersive X-ray spectroscopy and ice nucleation cold-plate, respectively. Freezing point temperatures for bacterial isolates ranged from -20.3 +/- 1.5 to -15.7 +/- 5.6 degrees C, and for melted snow samples from -9.5 +/- 1.0 to -18.4 +/- 0.1 degrees C. An isolate belonging to the genus Bacillus (96% similarity) had ice nucleation activity of -6.8 +/- 0.2 degrees C. Comparison with Montreal urban snow, revealed that a seemingly diverse community of bacteria exists in the Arctic with some taxa possibly originating from distinct ecological environments. We discuss the potential impact of snow microorganisms in the freezing and melting process of the snowpack in the Arctic. |
类型 | Article |
语种 | 英语 |
国家 | Canada |
收录类别 | SCI-E |
WOS记录号 | WOS:000356180900012 |
WOS关键词 | AMBIENT FUNGAL SPORES ; HIMALAYAN GLACIAL ICE ; RIBOSOMAL-RNA GENE ; REAL-TIME PCR ; SEA-ICE ; ORGANIC-COMPOUNDS ; DESERT DUST ; ASIAN DUST ; ATMOSPHERIC PROCESSES ; CULTURABLE BACTERIA |
WOS类目 | Environmental Sciences ; Meteorology & Atmospheric Sciences |
WOS研究方向 | Environmental Sciences & Ecology ; Meteorology & Atmospheric Sciences |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/186048 |
作者单位 | 1.McGill Univ, Dept Atmospher & Ocean Sci, Montreal, PQ, Canada; 2.McGill Univ, Fac Med, Montreal, PQ, Canada; 3.Genome Quebec Innovat Ctr, Montreal, PQ, Canada; 4.McGill Univ, Dept Chem, Montreal, PQ, Canada |
推荐引用方式 GB/T 7714 | Mortazavi, R.,Attiya, S.,Ariya, P. A.. Arctic microbial and next-generation sequencing approach for bacteria in snow and frost flowers: selected identification, abundance and freezing nucleation[J],2015,15(11):6183-6204. |
APA | Mortazavi, R.,Attiya, S.,&Ariya, P. A..(2015).Arctic microbial and next-generation sequencing approach for bacteria in snow and frost flowers: selected identification, abundance and freezing nucleation.ATMOSPHERIC CHEMISTRY AND PHYSICS,15(11),6183-6204. |
MLA | Mortazavi, R.,et al."Arctic microbial and next-generation sequencing approach for bacteria in snow and frost flowers: selected identification, abundance and freezing nucleation".ATMOSPHERIC CHEMISTRY AND PHYSICS 15.11(2015):6183-6204. |
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文件名称/大小 | 资源类型 | 版本类型 | 开放类型 | 使用许可 | ||
Arctic microbial and(2767KB) | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | 浏览 |
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