Arid
DOI10.5194/acp-15-6183-2015
Arctic microbial and next-generation sequencing approach for bacteria in snow and frost flowers: selected identification, abundance and freezing nucleation
Mortazavi, R.1; Attiya, S.2,3; Ariya, P. A.4
通讯作者Ariya, P. A.
来源期刊ATMOSPHERIC CHEMISTRY AND PHYSICS
ISSN1680-7316
EISSN1680-7324
出版年2015
卷号15期号:11页码:6183-6204
英文摘要

During the spring of 2009, as part of the Ocean-Atmosphere-Sea Ice-Snowpack (OASIS) campaign in Barrow, Alaska, USA, we examined the identity, population diversity, freezing nucleation ability of the microbial communities of five different snow types and frost flowers. In addition to the culturing and gene-sequence-based identification approach, we utilized a state-of-the-art genomic next-generation sequencing (NGS) technique to examine the diversity of bacterial communities in Arctic samples. Known phyla or candidate divisions were detected (11-18) with the majority of sequences (12.3-83.1 %) belonging to one of the five major phyla: Proteobacteria, Actinobacteria, Bacteroidetes, Firmicutes, and Cyanobacteria. The number of genera detected ranged from, 101-245. The highest number of cultivable bacteria was observed in frost flowers (FFs) and accumulated snow (AS) with 325 +/- 35 and 314 +/- 142 CFUmL(-1), respectively; and for cultivable fungi 5 +/- 1 CFUmL(-1) in windpack (WP) and blowing snow (BS). Morphology/elemental composition and ice-nucleating abilities of the identified taxa were obtained using high resolution electron microscopy with energy-dispersive X-ray spectroscopy and ice nucleation cold-plate, respectively. Freezing point temperatures for bacterial isolates ranged from -20.3 +/- 1.5 to -15.7 +/- 5.6 degrees C, and for melted snow samples from -9.5 +/- 1.0 to -18.4 +/- 0.1 degrees C. An isolate belonging to the genus Bacillus (96% similarity) had ice nucleation activity of -6.8 +/- 0.2 degrees C. Comparison with Montreal urban snow, revealed that a seemingly diverse community of bacteria exists in the Arctic with some taxa possibly originating from distinct ecological environments. We discuss the potential impact of snow microorganisms in the freezing and melting process of the snowpack in the Arctic.


类型Article
语种英语
国家Canada
收录类别SCI-E
WOS记录号WOS:000356180900012
WOS关键词AMBIENT FUNGAL SPORES ; HIMALAYAN GLACIAL ICE ; RIBOSOMAL-RNA GENE ; REAL-TIME PCR ; SEA-ICE ; ORGANIC-COMPOUNDS ; DESERT DUST ; ASIAN DUST ; ATMOSPHERIC PROCESSES ; CULTURABLE BACTERIA
WOS类目Environmental Sciences ; Meteorology & Atmospheric Sciences
WOS研究方向Environmental Sciences & Ecology ; Meteorology & Atmospheric Sciences
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/186048
作者单位1.McGill Univ, Dept Atmospher & Ocean Sci, Montreal, PQ, Canada;
2.McGill Univ, Fac Med, Montreal, PQ, Canada;
3.Genome Quebec Innovat Ctr, Montreal, PQ, Canada;
4.McGill Univ, Dept Chem, Montreal, PQ, Canada
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Mortazavi, R.,Attiya, S.,Ariya, P. A.. Arctic microbial and next-generation sequencing approach for bacteria in snow and frost flowers: selected identification, abundance and freezing nucleation[J],2015,15(11):6183-6204.
APA Mortazavi, R.,Attiya, S.,&Ariya, P. A..(2015).Arctic microbial and next-generation sequencing approach for bacteria in snow and frost flowers: selected identification, abundance and freezing nucleation.ATMOSPHERIC CHEMISTRY AND PHYSICS,15(11),6183-6204.
MLA Mortazavi, R.,et al."Arctic microbial and next-generation sequencing approach for bacteria in snow and frost flowers: selected identification, abundance and freezing nucleation".ATMOSPHERIC CHEMISTRY AND PHYSICS 15.11(2015):6183-6204.
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