Arid
DOI10.1007/s13213-014-0897-9
Diversity and phylogenetic profiling of niche-specific Bacilli from extreme environments of India
Yadav, Ajar Nath1; Verma, Priyanka1; Kumar, Murugan1; Pal, Kamal K.2; Dey, Rinku2; Gupta, Alka5; Padaria, Jasdeep Chatrath3; Gujar, Govind T.4; Kumar, Sudheer6; Suman, Archna1; Prasanna, Radha1; Saxena, Anil K.1
通讯作者Saxena, Anil K.
来源期刊ANNALS OF MICROBIOLOGY
ISSN1590-4261
EISSN1869-2044
出版年2015
卷号65期号:2页码:611-629
英文摘要

The diversity of culturable, aerobic and heterotrophic Bacillus and Bacillus-derived genera (BBDG) was investigated in various extreme environments (including thermal springs, cold deserts, mangroves, salt lakes, arid regions, salt pans and acidic soils) of India. Heat treatment followed by enrichment in different media led to a total of 893 bacterial isolates. Amplified ribosomal DNA restriction analysis (ARDRA) using three restriction enzymes AluI, MspI and HaeIII led to the clustering of these isolates into 12-74 groups for the different sites at 75 % similarity index, adding up to 559 groups. Phylogenetic analysis based on 16S rRNA gene sequencing led to the identification of 392 bacilli, grouped in two families, Bacillaceae (89.03 %) and Paenibacillaceae (10.97 %), and included 13 different genera with 75 distinct species. It was found that among the thirteen genera, nine (Bacillus, Halobacillus, Lysinibacillus, Oceanobacillus, Pontibacillus, Salinibacillus, Sediminibacillus, Thalassobacillus and Virgibacillus) belonged to Bacillaceae and four (Ammoniphilus, Aneurinibacillus, Brevibacillus and Paenibacillus) belonged to Paenibacillaceae. Novel isolates tolerant to low and high pH and temperature, salt and low moisture were identified. The major outcome of the present investigation was the identification of niche-specific species and also the ubiquitous presence of selected species of BBDG, which illustrate the diversity and pervasive nature of BBDG in extreme environments.


英文关键词ARDRA Bacillus Bacillus derived genera 16S rRNA gene Extreme habitats
类型Article
语种英语
国家India
收录类别SCI-E
WOS记录号WOS:000354724300002
WOS关键词16S RIBOSOMAL-RNA ; GEN-NOV ; BACTERIAL DIVERSITY ; FORMING BACTERIUM ; SEQUENCE ; WATER ; SOIL ; SEA ; ICE ; IDENTIFICATION
WOS类目Biotechnology & Applied Microbiology ; Microbiology
WOS研究方向Biotechnology & Applied Microbiology ; Microbiology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/185758
作者单位1.Indian Agr Res Inst, Div Microbiol, New Delhi 110012, India;
2.Directorate Groundnut Res, Junagadh 362001, Gujarat, India;
3.Natl Res Ctr Plant Biotechnol, New Delhi 110012, India;
4.Indian Agr Res Inst, Div Entomol, New Delhi 110012, India;
5.Cent Plantat Crops Res Inst, Kasargod 671124, India;
6.Natl Bur Agr Important Microorganisms, Kusmaur 275101, Maunath Bhanjan, India
推荐引用方式
GB/T 7714
Yadav, Ajar Nath,Verma, Priyanka,Kumar, Murugan,et al. Diversity and phylogenetic profiling of niche-specific Bacilli from extreme environments of India[J],2015,65(2):611-629.
APA Yadav, Ajar Nath.,Verma, Priyanka.,Kumar, Murugan.,Pal, Kamal K..,Dey, Rinku.,...&Saxena, Anil K..(2015).Diversity and phylogenetic profiling of niche-specific Bacilli from extreme environments of India.ANNALS OF MICROBIOLOGY,65(2),611-629.
MLA Yadav, Ajar Nath,et al."Diversity and phylogenetic profiling of niche-specific Bacilli from extreme environments of India".ANNALS OF MICROBIOLOGY 65.2(2015):611-629.
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