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In the large-scale irrigation schemes of the lower Ili River Basin of Kazakhstan, crop rotation combines paddy rice and non-rice crops. Continuous irrigation is practiced in paddy fields, whereas other crops are sustained from groundwater after only limited early irrigation. The water table in non-rice crops is raised by seepage from canals and the flooded paddy fields. We investigated the areal extent to which the groundwater level of non-irrigated fields is influenced by seepage from canals and paddy fields by examining the relationship between distance (from canal and paddy field) and groundwater level in upland fields. The groundwater level was influenced for up to 300 and 400 m from the canals and paddy fields, respectively. Geographic information system analysis of crop and canal patterns in the 11 selected years showed that if the zone of influence is 300 and 400 m from the canals and paddy fields, respectively, the groundwater level of most of the area of upland fields was raised by seepage. We conclude that the water supply to cropping fields by seepage from irrigation canals and paddy fields is adequate, but the spatial distribution of the paddy fields may be an important factor that needs more attention to help improve water use efficiency in this irrigation district.