干旱区生态环境知识资源中心(Arid): Comparative de novo transcriptome analysis and metabolic pathway studies of Citrus paradisi flavedo from naive stage to ripened stage

Arid

DOI	10.1007/s11033-014-3166-x
	Comparative de novo transcriptome analysis and metabolic pathway studies of Citrus paradisi flavedo from naive stage to ripened stage
	Patel, Maulik; Manvar, Toral; Apurwa, Sachin; Ghosh, Arpita; Tiwari, Tanushree; Chikara, Surendra K.
通讯作者	Chikara, Surendra K.
来源期刊	MOLECULAR BIOLOGY REPORTS
ISSN	0301-4851
EISSN	1573-4978
出版年	2014
卷号	41 期号:5 页码:3071-3080
英文摘要	Grapefruit (Citrus pardisi) is a popular citrus fruit that is a cross between a sweet orange and pummelo. This research article focuses on an in silico approach for comparative analysis of C. paradisi green flavedo (GF) and ethylene treated flavedo (ETF) transcriptome data. Our pathway analysis provides comprehensive information of genes playing significant role in different stages of ripening in fruit. De novo assembly was carried out using six different assemblers namely GS assembler, SeqMan NGEN, Velvet/Oases, CLC, iAssembler and Cortex followed by subsequent meta-assembly, annotation and pathway analysis. We conclude that de novo transcriptome assembly using meta-assembly approach is used to increase assembly quality in comparison to single assembler.
英文关键词	Green flavedo (GF) Ethylene treated flavedo (ETF) Sequence read archive (SRA) The arabidopsis information resource (TAIR) Enzyme commission number (EC)
类型	Article
语种	英语
国家	India
收录类别	SCI-E
WOS记录号	WOS:000335734400040
WOS关键词	GENE-EXPRESSION ; ABSCISIC-ACID ; ETHYLENE ; ANNOTATION
WOS类目	Biochemistry & Molecular Biology
WOS研究方向	Biochemistry & Molecular Biology
资源类型	期刊论文
条目标识符	http://119.78.100.177/qdio/handle/2XILL650/183891
作者单位	Xcelris Genom Res Ctr, Dept Genom, Ahmadabad, India
推荐引用方式 GB/T 7714	Patel, Maulik,Manvar, Toral,Apurwa, Sachin,et al. Comparative de novo transcriptome analysis and metabolic pathway studies of Citrus paradisi flavedo from naive stage to ripened stage[J],2014,41(5):3071-3080.
APA	Patel, Maulik,Manvar, Toral,Apurwa, Sachin,Ghosh, Arpita,Tiwari, Tanushree,&Chikara, Surendra K..(2014).Comparative de novo transcriptome analysis and metabolic pathway studies of Citrus paradisi flavedo from naive stage to ripened stage.MOLECULAR BIOLOGY REPORTS,41(5),3071-3080.
MLA	Patel, Maulik,et al."Comparative de novo transcriptome analysis and metabolic pathway studies of Citrus paradisi flavedo from naive stage to ripened stage".MOLECULAR BIOLOGY REPORTS 41.5(2014):3071-3080.