Arid
DOI10.1007/s10295-013-1362-7
Habitat-specific type I polyketide synthases in soils and street sediments
Hill, Patrick1; Piel, Joern2; Aris-Brosou, Stephane1; Kristufek, Vaclav3; Boddy, Christopher N.1,4; Dijkhuizen, Lubbert5
通讯作者Hill, Patrick
来源期刊JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
ISSN1367-5435
EISSN1476-5535
出版年2014
卷号41期号:1页码:75-85
英文摘要

Actinomycetes produce many pharmaceutically useful compounds through type I polyketide biosynthetic pathways. Soil has traditionally been an important source for these actinomycete-derived pharmaceuticals. As the rate of antibiotic discovery has decreased and the incidence of antibiotic resistance has increased, researchers have looked for alternatives to soil for bioprospecting. Street sediment, where actinomycetes make up a larger fraction of the bacterial population than in soil, is one such alternative environment. To determine if these differences in actinomycetal community structure are reflected in type I polyketide synthases (PKSI) distribution, environmental DNA from soils and street sediments was characterized by sequencing amplicons of PKSI-specific PCR primers. Amplicons covered two domains: the last 80 amino acids of the ketosynthase (KS) domain and the first 240 amino acids of the acyltransferase (AT) domain. One hundred and ninety clones from ten contrasting soils from six regions and nine street sediments from six cities were sequenced. Twenty-five clones from two earthworm-affected samples were also sequenced. UniFrac lineage-specific analysis identified two clades that clustered with actinomycetal GenBank matches that were street sediment-specific, one similar to the PKSI segment of the mycobactin siderophore involved in mycobacterial virulence. A clade of soil-specific sequences clustered with GenBank matches from the ambruticin and jerangolid pathways of Sorangium cellulosum. All three of these clades were found in sites > 700 km apart. Street sediments are enriched in actinomycetal PKSIs. Non-actinomycetal PKSI pathways may be more chemically diverse than actinomycetal PKSIs. Common soil and street sediment PKIs are globally distributed.


英文关键词Natural product discovery Polyketides Urban microbiology Bioprospecting Mycobactin
类型Article
语种英语
国家Canada ; Switzerland ; Czech Republic ; Netherlands
收录类别SCI-E
WOS记录号WOS:000329324700009
WOS关键词PHYLOGENETIC ANALYSIS ; SUBSTRATE-SPECIFICITY ; MICROBIAL COMMUNITIES ; MAXIMUM-LIKELIHOOD ; ATACAMA DESERT ; ARID SOILS ; DIVERSITY ; SELECTION ; STREPTOMYCES ; ANTIBIOTICS
WOS类目Biotechnology & Applied Microbiology
WOS研究方向Biotechnology & Applied Microbiology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/183488
作者单位1.Univ Ottawa, Dept Biol, Ottawa, ON K1N 6N5, Canada;
2.ETH, Inst Microbiol, CH-8093 Zurich, Switzerland;
3.AS CR, Ctr Biol, Vvi, Inst Soil Biol, Ceske Budejovice 37005, Czech Republic;
4.Univ Ottawa, Dept Chem, Ottawa, ON K1N 6N5, Canada;
5.Univ Groningen, Dept Microbial Physiol, Groningen Biomol Sci & Biotechnol Inst GBB, NL-9747 AG Groningen, Netherlands
推荐引用方式
GB/T 7714
Hill, Patrick,Piel, Joern,Aris-Brosou, Stephane,et al. Habitat-specific type I polyketide synthases in soils and street sediments[J],2014,41(1):75-85.
APA Hill, Patrick,Piel, Joern,Aris-Brosou, Stephane,Kristufek, Vaclav,Boddy, Christopher N.,&Dijkhuizen, Lubbert.(2014).Habitat-specific type I polyketide synthases in soils and street sediments.JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY,41(1),75-85.
MLA Hill, Patrick,et al."Habitat-specific type I polyketide synthases in soils and street sediments".JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY 41.1(2014):75-85.
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