Arid
DOI10.5194/gmd-7-2531-2014
Implementation and scaling of the fully coupled Terrestrial Systems Modeling Platform (TerrSysMP v1.0) in a massively parallel supercomputing environment - a case study on JUQUEEN (IBM Blue Gene/Q)
Gasper, F.1,2; Goergen, K.2,3,4; Shrestha, P.3; Sulis, M.3; Rihani, J.3; Geimer, M.4; Kollet, S.1,2
通讯作者Gasper, F.
来源期刊GEOSCIENTIFIC MODEL DEVELOPMENT
ISSN1991-959X
EISSN1991-9603
出版年2014
卷号7期号:5页码:2531-2543
英文摘要

Continental-scale hyper-resolution simulations constitute a grand challenge in characterizing nonlinear feedbacks of states and fluxes of the coupled water, energy, and biogeochemical cycles of terrestrial systems. Tackling this challenge requires advanced coupling and supercomputing technologies for earth system models that are discussed in this study, utilizing the example of the implementation of the newly developed Terrestrial Systems Modeling Platform (TerrSysMP v1.0) on JUQUEEN (IBM Blue Gene/Q) of the Julich Supercomputing Centre, Germany. The applied coupling strategies rely on the Multiple Program Multiple Data (MPMD) paradigm using the OASIS suite of external couplers, and require memory and load balancing considerations in the exchange of the coupling fields between different component models and the allocation of computational resources, respectively. Using the advanced profiling and tracing tool Scalasca to determine an optimum load balancing leads to a 19% speedup. In massively parallel supercomputer environments, the coupler OASIS-MCT is recommended, which resolves memory limitations that may be significant in case of very large computational domains and exchange fields as they occur in these specific test cases and in many applications in terrestrial research. However, model I/O and initialization in the petascale range still require major attention, as they constitute true big data challenges in light of future exascale computing resources. Based on a factor-two speedup due to compiler optimizations, a refactored coupling interface using OASIS-MCT and an optimum load balancing, the problem size in a weak scaling study can be increased by a factor of 64 from 512 to 32 768 processes while maintaining parallel efficiencies above 80% for the component models.


类型Article
语种英语
国家Germany
收录类别SCI-E
WOS记录号WOS:000344730900041
WOS关键词ATMOSPHERE ; LAND ; FLOW ; SIMULATIONS ; TOOLSET ; COSMO
WOS类目Geosciences, Multidisciplinary
WOS研究方向Geology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/182317
作者单位1.Forschungszentrum Julich, Agrosphere IBG 3, D-52425 Julich, Germany;
2.ABC J Geoverbund, Ctr High Performance Sci Comp Terr Syst HPSC Terr, Julich, Germany;
3.Univ Bonn, Inst Meteorol, Bonn, Germany;
4.Forschungszentrum Julich, Julich Supercomp Ctr, D-52425 Julich, Germany
推荐引用方式
GB/T 7714
Gasper, F.,Goergen, K.,Shrestha, P.,et al. Implementation and scaling of the fully coupled Terrestrial Systems Modeling Platform (TerrSysMP v1.0) in a massively parallel supercomputing environment - a case study on JUQUEEN (IBM Blue Gene/Q)[J],2014,7(5):2531-2543.
APA Gasper, F..,Goergen, K..,Shrestha, P..,Sulis, M..,Rihani, J..,...&Kollet, S..(2014).Implementation and scaling of the fully coupled Terrestrial Systems Modeling Platform (TerrSysMP v1.0) in a massively parallel supercomputing environment - a case study on JUQUEEN (IBM Blue Gene/Q).GEOSCIENTIFIC MODEL DEVELOPMENT,7(5),2531-2543.
MLA Gasper, F.,et al."Implementation and scaling of the fully coupled Terrestrial Systems Modeling Platform (TerrSysMP v1.0) in a massively parallel supercomputing environment - a case study on JUQUEEN (IBM Blue Gene/Q)".GEOSCIENTIFIC MODEL DEVELOPMENT 7.5(2014):2531-2543.
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