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Perchlorate is a widely studied environmental contaminant that may adversely affect human health, and whose natural occurrence has emerged as a subject of great interest. Naturally formed perchlorate has been found to co-occur with nitrate in arid environments worldwide, but the relationship is not fully understood in the desert soils of the southwestern United States. The main objective of this research was to explore the origin, pedogenic distribution, and possible preservation of perchlorate and nitrate in the Mojave Desert mud hill deposits of California and to determine if the co-occurrence of putatively natural perchlorate was significantly correlated with nitrate in these soils. We identified 39 soil horizons in the Mojave Desert, California that contained reportable levels of perchlorate (MRL > 165 mu g kg(-1)) with a maximum concentration of 23 mg kg(-1). A weak yet significant correlation was observed between perchlorate and nitrate (r(2) = 0.321***), which could be indicative of similar mechanisms of accumulation. When compared to published data for the Atacama Desert, the Mojave Desert perchlorate concentrations were remarkably lower for a given nitrate concentration. Oxygen isotopes in the nitrate were examined to identify variation within the Mojave Desert field sites, and to compare with the available literature for the Atacama Desert. The Mojave Desert Delta O-17 values ranged from 7 parts per thousand to 13 parts per thousand, indicating a mixture of biologically and atmospherically-derived nitrate. An investigation of the distribution of perchlorate among soil horizons revealed that over sixty percent of the samples containing perchlorate were from C horizons while only twenty percent of the samples were from B horizons and even fewer in the overlying A horizons. Soil chemical, morphologic, and geologic characteristics of the soils suggest that the perchlorate, nitrate and/or other soluble salts have moved in a "bottom-up" manner wherein the salts were deposited in strata through geological time and have since been redistributed and evapo-concentrated into the upper soil horizons by capillary rise. (C) 2012 Elsevier Ltd. All rights reserved.