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Nitrogen fertilizer applied to soil is the primary source of the greenhouse gas (GHG) nitrous oxide (N2O). The assessment of N2O emissions, or net fluxes of the GHG methane (CH4), are lacking for upland, arid agricultural ecosystems worldwide. In California, where rates of application for nitrogen (N) can exceed 300 kg per hectare for N-intensive fruit and nut crops (>2 million acres), liquid N fertilizers applied through microirrigation systems (fertigation) represent the predominant method of N fertilization. Little information is available for how these concentrated and spatially discrete N solution applications influence N2O emissions and net CH4 fluxes (the sum of methanogenic and methanotrophic activity). In this study we examined soil N2O-N emissions and net CH4 fluxes for drip and stationary microsprinklers, two of the most widely used fertigation emitters, in an almond orchard where 235.5 kg N/ha were applied during the season of measurement (2009-2010). We accomplished this by modeling the spatial patterns of N2O and CH4 at the scale of meters and centimeters using simple mathematical approaches. For two applications of 33.6 kg/ha and three applications of 56.1 kg/ha targeted to the phenologic stages with highest tree N demand, the spatial patterns of N2O fluxes were similar to the emitter water distribution pattern and independent of temperature and fertilizer N form applied. Net CH4 fluxes were extremely low and there was no discernible spatial pattern, but areas kept dry (driveways between tree rows) generally consumed CH4 while it was produced in the microirrigation wet-up area. The N2O-N emissions for fertigation events at the scale of days, and over a season, were significantly higher from the drip irrigated orchard (1.6 +/- 0.7 kg N2O-N ha(-1) yr(-1)) than a microsprinkler irrigated orchard (0.6 +/- 0.3 kg N2O-N ha(-1) yr(-1)). N2O emissions and net CH4 fluxes were only significantly correlated with soil water filled pore space and not with mineral-N. The correlation was much better for N2O emissions. Our results greatly improve our ability to scale N2O production to the orchard level, and provide growers with a tool for lowering almond orchard carbon and nitrogen footprints.