Arid
DOI10.1111/cla.12013
Uncovering historical signature of mitochondrial DNA hidden in the nuclear genome: the biogeography of Schistocerca revisited
Song, Hojun1,2,3; Moulton, Matthew J.2,3; Hiatt, Kevin D.2,3; Whiting, Michael F.2,3
通讯作者Song, Hojun
来源期刊CLADISTICS
ISSN0748-3007
EISSN1096-0031
出版年2013
卷号29期号:6页码:643-662
英文摘要

Inadvertent coamplification of nuclear mitochondrial pseudogenes (numts) is a serious problem in mitochondrial systematics, but numts can also be a valuable source of information because they represent ancient forms of mtDNA. We present a conceptual framework of numt accumulation, which states that in a given species there can be two types of numts, synaponumts and autaponumts, resulting from integration occurring respectively before and after a speciation event. In a given clade, a species that diverged early can only have its own autaponumts as well as synaponumts that were already present in the genome of the last common ancestor. A species that diverged more recently may, however, have many different synaponumts integrated at each different divergence as well as its own autaponumts. Therefore it is possible to decipher the evolutionary history of a species based on the phylogenetic distribution of numts in a simultaneous analysis of numts and extant mtDNA. In this study, we test this idea empirically in the context of addressing a controversial question regarding the biogeography of the grasshopper genus Schistocerca Stal (Orthoptera: Acrididae), based on numts of the cytochrome c oxidase subunit I (COI) gene. We find that our empirical data can be explained adequately by our conceptual framework, and that the phylogenetic distribution of COI numts reveals intricate evolutionary histories about past speciation events that are otherwise difficult to detect using conventional markers. Our study strongly favours the Old World origin of the desert locust, Schistocerca gregaria and the New World Schistocerca species are descendants from an ancestral gregaria-like species that colonized the New World via westward transatlantic flight. However, the phylogenetic distribution of S. gregaria numts raises a distinct possibility that there might have been multiple founding events from Africa to America to give rise to the present-day diversity of the genus. This is a case study for a creative use of numts as molecular fossils, and we demonstrate that numts provide an interesting and powerful phylogenetic signal, much more than what extant mtDNA or nuclear gene sequences might be able to provide. (C) The Willi Hennig Society 2013


类型Article
语种英语
国家USA
收录类别SCI-E
WOS记录号WOS:000327022000006
WOS关键词POLYPHAGOUS GRASSHOPPER ; HORIZONTAL TRANSFER ; AMERICANA COMPLEX ; INTERACTIVE TREE ; ORTHOPTERA ; SEQUENCES ; PSEUDOGENES ; INSERTIONS ; EVOLUTION ; NUMTS
WOS类目Evolutionary Biology
WOS研究方向Evolutionary Biology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/176432
作者单位1.Univ Cent Florida, Dept Biol, Orlando, FL 32816 USA;
2.Brigham Young Univ, Dept Biol, Provo, UT 84602 USA;
3.Brigham Young Univ, ML Bean Life Sci Museum, Provo, UT 84602 USA
推荐引用方式
GB/T 7714
Song, Hojun,Moulton, Matthew J.,Hiatt, Kevin D.,et al. Uncovering historical signature of mitochondrial DNA hidden in the nuclear genome: the biogeography of Schistocerca revisited[J],2013,29(6):643-662.
APA Song, Hojun,Moulton, Matthew J.,Hiatt, Kevin D.,&Whiting, Michael F..(2013).Uncovering historical signature of mitochondrial DNA hidden in the nuclear genome: the biogeography of Schistocerca revisited.CLADISTICS,29(6),643-662.
MLA Song, Hojun,et al."Uncovering historical signature of mitochondrial DNA hidden in the nuclear genome: the biogeography of Schistocerca revisited".CLADISTICS 29.6(2013):643-662.
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