Knowledge Resource Center for Ecological Environment in Arid Area
DOI | 10.1038/nbt.2195 |
Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential | |
Zhang, Gengyun1; Liu, Xin; Quan, Zhiwu1; Cheng, Shifeng; Xu, Xun1,2; Pan, Shengkai; Xie, Min; Zeng, Peng; Yue, Zhen; Wang, Wenliang; Tao, Ye; Bian, Chao; Han, Changlei; Xia, Qiuju1; Peng, Xiaohua1; Cao, Rui; Yang, Xinhua; Zhan, Dongliang; Hu, Jingchu; Zhang, Yinxin1; Li, Henan1; Li, Hua1; Li, Ning1; Wang, Junyi; Wang, Chanchan1; Wang, Renyi1; Guo, Tao1; Cai, Yanjie1; Liu, Chengzhang1; Xiang, Haitao1; Shi, Qiuxiang1; Huang, Ping1; Chen, Qingchun1; Li, Yingrui; Wang, Jun3; Zhao, Zhihai4; Wang, Jian1 | |
通讯作者 | Wang, Jun |
来源期刊 | NATURE BIOTECHNOLOGY |
ISSN | 1087-0156 |
EISSN | 1546-1696 |
出版年 | 2012 |
卷号 | 30期号:6页码:549-+ |
英文摘要 | Foxtail millet (Setaria italica), a member of the Poaceae grass family, is an important food and fodder crop in arid regions and has potential for use as a C-4 biofuel. It is a model system for other biofuel grasses, including switchgrass and pearl millet. We produced a draft genome (similar to 423 Mb) anchored onto nine chromosomes and annotated 38,801 genes. Key chromosome reshuffling events were detected through collinearity identification between foxtail millet, rice and sorghum including two reshuffling events fusing rice chromosomes 7 and 9, 3 and 10 to foxtail millet chromosomes 2 and 9, respectively, that occurred after the divergence of foxtail millet and rice, and a single reshuffling event fusing rice chromosome 5 and 12 to foxtail millet chromosome 3 that occurred after the divergence of millet and sorghum. Rearrangements in the C-4 photosynthesis pathway were also identified. |
类型 | Article |
语种 | 英语 |
国家 | Peoples R China ; USA ; Denmark |
收录类别 | SCI-E |
WOS记录号 | WOS:000305158600025 |
WOS关键词 | L. P. BEAUV ; C-4 PHOTOSYNTHESIS ; RNA-SEQ ; LTR RETROTRANSPOSONS ; MOLECULAR EVOLUTION ; CARBONIC-ANHYDRASE ; DNA-SEQUENCES ; GENE FAMILY ; IDENTIFICATION ; ALIGNMENT |
WOS类目 | Biotechnology & Applied Microbiology |
WOS研究方向 | Biotechnology & Applied Microbiology |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/174154 |
作者单位 | 1.Chinese Minist Agr, BGI Shenzhen, Key Lab Genom, Shenzhen, Peoples R China; 2.BGI Amer, Cambridge, MA USA; 3.Univ Copenhagen, Dept Biol, Copenhagen, Denmark; 4.Zhangjiakou Acad Agr Sci, Inst Millet, Zhangjiakou, Peoples R China |
推荐引用方式 GB/T 7714 | Zhang, Gengyun,Liu, Xin,Quan, Zhiwu,et al. Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential[J],2012,30(6):549-+. |
APA | Zhang, Gengyun.,Liu, Xin.,Quan, Zhiwu.,Cheng, Shifeng.,Xu, Xun.,...&Wang, Jian.(2012).Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential.NATURE BIOTECHNOLOGY,30(6),549-+. |
MLA | Zhang, Gengyun,et al."Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential".NATURE BIOTECHNOLOGY 30.6(2012):549-+. |
条目包含的文件 | 条目无相关文件。 |
除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。