Arid
DOI10.1007/s10482-012-9705-3
Bacterial community structure in the rhizosphere of three cactus species from semi-arid highlands in central Mexico
Felix Aguirre-Garrido, J.; Montiel-Lugo, Daniel; Hernandez-Rodriguez, Cesar2; Torres-Cortes, Gloria3; Millan, Vicenta3; Toro, Nicolas3; Martinez-Abarca, Francisco3; Ramirez-Saad, Hugo C.1
通讯作者Ramirez-Saad, Hugo C.
来源期刊ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
ISSN0003-6072
出版年2012
卷号101期号:4页码:891-904
英文摘要

The nature reserve of Tehuacan-Cuicatlan in central Mexico is known for its diversity and endemism mainly in cactus plants. Although the xerophytic flora is reasonably documented, the bacterial communities associated with these species have been largely neglected. We assessed the diversity and composition of bacterial communities in bulk (non-rhizospheric) soil and the rhizosphere of three cactus plant species: Mammillaria carnea, Opuntia pilifera and Stenocereus stellatus, approached using cultivation and molecular techniques, considering the possible effect of dry and rainy seasons. Cultivation-dependent methods were focused on putative N-2-fixers and heterotrophic aerobic bacteria, in the two media tested the values obtained for dry season samples grouped together regardless of the sample type (rhizospheric or non-rhizospheric), these groups also included the non-rhizospheric sample for rainy season, on each medium. These CFU values were smaller and significantly different from those obtained on rhizospheric samples from rainy season. Genera composition among isolates of the rhizospheric samples was very similar for each season, the most abundant taxa being alpha-Proteobacteria, Actinobacteria and Firmicutes. Interestingly, the genus Ochrobactrum was highly represented among rhizospheric samples, when cultured in N-free medium. The structure of the bacterial communities was approached with molecular techniques targeting partial 16S rRNA sequences such as denaturing gradient gel electrophoresis and serial analysis of ribosomal sequence tags. Under these approaches, the most represented bacterial phyla were Actinobacteria, Proteobacteria and Acidobacteria. The first two were also highly represented when using isolation techniques.


英文关键词Rhizosphere Cactus Mammillaria Stenocereus Opuntia DGGE SARST Metagenomic rhizosphere and NifH
类型Article
语种英语
国家Mexico ; Spain
收录类别SCI-E
WOS记录号WOS:000303402400021
WOS关键词RIBOSOMAL-RNA ; SP-NOV ; PACHYCEREUS-PRINGLEI ; ROOT-NODULES ; SOIL ; SEQUENCES ; DESERT ; PLANT ; AZOSPIRILLUM ; EFFICIENT
WOS类目Microbiology
WOS研究方向Microbiology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/171231
作者单位1.Univ Autonoma Metropolitana Xochimilco, Dept Sistemas Biol, Mexico City 04960, DF, Mexico;
2.IPN, Dept Microbiol, Escuela Nacl Ciencias Biol, Mexico City 11340, DF, Mexico;
3.CSIC, Estn Expt Zaidin, Granada 18008, Spain
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Felix Aguirre-Garrido, J.,Montiel-Lugo, Daniel,Hernandez-Rodriguez, Cesar,et al. Bacterial community structure in the rhizosphere of three cactus species from semi-arid highlands in central Mexico[J],2012,101(4):891-904.
APA Felix Aguirre-Garrido, J..,Montiel-Lugo, Daniel.,Hernandez-Rodriguez, Cesar.,Torres-Cortes, Gloria.,Millan, Vicenta.,...&Ramirez-Saad, Hugo C..(2012).Bacterial community structure in the rhizosphere of three cactus species from semi-arid highlands in central Mexico.ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY,101(4),891-904.
MLA Felix Aguirre-Garrido, J.,et al."Bacterial community structure in the rhizosphere of three cactus species from semi-arid highlands in central Mexico".ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY 101.4(2012):891-904.
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