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Calcrete (pedogenic Ca carbonate) is an important sampling medium for geochemical gold (Au) exploration in semi-arid and arid regions of Australia, because it is widespread, easy to sample and calcium (Ca) shows a strong positive correlation with Au, but not with base metals, in calcrete overlying buried Au mineralization. In this study we show that the formation of Au-anomalous calcrete can be biomediated through the activity of resident microorganisms, and may not simply be the result of passive nucleation on inactive cells or evapotransporative processes. Calcified microfossils are highly abundant in calcrete from the Barns Au-prospect in South Australia. These microfossils are morphological analogues of calcified cells and biofilms formed in laboratory experiments conducted with active bacterial cultures enriched from Au-anomalous calcareous sand from the Barns prospect. Calcium carbonates precipitated by these cultures consisted mostly of calcite, which is the main carbonate mineral in calcrete. Synchrotron micro-X-ray fluorescence (S-mu XRF) mapping was used to assess the distribution of Au, Zn, Ca and other metals in Ca carbonates precipitated by active bacterial cultures. On a gm-scale the distribution of Au was heterogeneous in these Ca carbonates and differed from base metal distribution, thus mimicking the spatial separation of these metals observed in calcrete. The speciation of Au in Ca carbonates precipitated by active bacteria was measured using micro-X-ray absorption near edge structure spectroscopy (mu-XANES) and resembled that observed in Au-anomalous calcrete closely. While metallic Au was observed in Au ’hotpots’, ionic Au was detected in the halo surrounding the ’hotspot’. In contrast, the precipitates produced in the presence of dead bacterial cells or by raising solution pH or pCO(2), i.e., hydroxylapatite, portlandite and vaterite, respectively, did not reflect the mineralogy of calcrete. Gold distribution and speciation in vaterite, formed by raising pCO(2), were homogenous and did not reproduce the variation observed in calcrete and Ca carbonates precipitated by active cells. Increasing the supersaturation with respect to Ca in solution by incremental drying of the medium produced only X-ray amorphous precipitates, or hydroxylapatite in the presence heat-killed cells. In conclusion, this study shows that active microbial processes that combine biogenic Ca carbonatogenesis with Au precipitation are likely to drive the formation of Au-anomalous calcrete. Crown copyright (C) 2011 Published by Elsevier Ltd. All rights reserved.