Arid
DOI10.1111/j.1462-2920.2008.01809.x
Phylogenetic analysis of actinobacterial populations associated with Antarctic Dry Valley mineral soils
Babalola, Olubukola O.1; Kirby, Bronwyn M.1; Le Roes-Hill, Marilize2; Cook, Andrew E.3; Cary, S. Craig4; Burton, Stephanie G.2; Cowan, Don A.1
通讯作者Cowan, Don A.
来源期刊ENVIRONMENTAL MICROBIOLOGY
ISSN1462-2912
EISSN1462-2920
出版年2009
卷号11期号:3页码:566-576
英文摘要

Despite the apparent severity of the environmental conditions in the McMurdo Dry Valleys, Eastern Antarctica, recent phylogenetic studies conducted on mineral soil samples have revealed the presence of a wide diversity of microorganisms, with actinobacteria representing one of the largest phylotypic groups. Previous metagenomic studies have shown that the majority of Antarctic actinobacterial populations are classified as ’uncultured’. In this study, we assessed the diversity of actinobacteria in Antarctic cold desert soils by complementing traditional culture-based techniques with a metagenomic study. Phylogenetic analysis of clones generated with actinobacterium- and streptomycete-specific PCR primers revealed that the majority of the phylotypes were most closely related to uncultured Pseudonocardia and Nocardioides species. Phylotypes most closely related to a number of rarer actinobacteria genera, including Geodermatophilus, Modestobacter and Sporichthya, were also identified. While complementary culture-dependent studies isolated a number of Nocardia and Pseudonocardia species, the majority of the cultured isolates (> 80%) were Streptomyces species - although phylotypes affiliated to the genus Streptomyces were detected at a low frequency in the metagenomic study. This study confirms that Antarctic Dry Valley desert soil harbours highly diverse actinobacterial communities and suggests that many of the phylotypes identified may represent novel, uncultured species.


类型Article
语种英语
国家South Africa ; Australia ; New Zealand
收录类别SCI-E
WOS记录号WOS:000263755700003
WOS关键词RIBOSOMAL-RNA GENE ; SP-NOV. ; PSYCHROPHILIC BACTERIUM ; SEQUENCE ALIGNMENT ; MAT SAMPLE ; DIVERSITY ; AMPLIFICATION ; MARINE ; MODESTOBACTER ; ENVIRONMENTS
WOS类目Microbiology
WOS研究方向Microbiology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/160517
作者单位1.Univ Western Cape, Inst Microbial Biotechnol & Metagenom, Dept Biotechnol, ZA-7535 Bellville, Cape Town, South Africa;
2.Univ Cape Town, Biotransformat & Tech Biol Grp, Dept Chem Engn, ZA-7701 Rondebosch, South Africa;
3.Univ Queensland, Adv Water Management Ctr, Brisbane, Qld, Australia;
4.Univ Waikato, Dept Biol Sci, Hamilton, New Zealand
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Babalola, Olubukola O.,Kirby, Bronwyn M.,Le Roes-Hill, Marilize,et al. Phylogenetic analysis of actinobacterial populations associated with Antarctic Dry Valley mineral soils[J],2009,11(3):566-576.
APA Babalola, Olubukola O..,Kirby, Bronwyn M..,Le Roes-Hill, Marilize.,Cook, Andrew E..,Cary, S. Craig.,...&Cowan, Don A..(2009).Phylogenetic analysis of actinobacterial populations associated with Antarctic Dry Valley mineral soils.ENVIRONMENTAL MICROBIOLOGY,11(3),566-576.
MLA Babalola, Olubukola O.,et al."Phylogenetic analysis of actinobacterial populations associated with Antarctic Dry Valley mineral soils".ENVIRONMENTAL MICROBIOLOGY 11.3(2009):566-576.
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