Knowledge Resource Center for Ecological Environment in Arid Area
DOI | 10.1111/j.1462-2920.2008.01809.x |
Phylogenetic analysis of actinobacterial populations associated with Antarctic Dry Valley mineral soils | |
Babalola, Olubukola O.1; Kirby, Bronwyn M.1; Le Roes-Hill, Marilize2; Cook, Andrew E.3; Cary, S. Craig4; Burton, Stephanie G.2; Cowan, Don A.1 | |
通讯作者 | Cowan, Don A. |
来源期刊 | ENVIRONMENTAL MICROBIOLOGY
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ISSN | 1462-2912 |
EISSN | 1462-2920 |
出版年 | 2009 |
卷号 | 11期号:3页码:566-576 |
英文摘要 | Despite the apparent severity of the environmental conditions in the McMurdo Dry Valleys, Eastern Antarctica, recent phylogenetic studies conducted on mineral soil samples have revealed the presence of a wide diversity of microorganisms, with actinobacteria representing one of the largest phylotypic groups. Previous metagenomic studies have shown that the majority of Antarctic actinobacterial populations are classified as ’uncultured’. In this study, we assessed the diversity of actinobacteria in Antarctic cold desert soils by complementing traditional culture-based techniques with a metagenomic study. Phylogenetic analysis of clones generated with actinobacterium- and streptomycete-specific PCR primers revealed that the majority of the phylotypes were most closely related to uncultured Pseudonocardia and Nocardioides species. Phylotypes most closely related to a number of rarer actinobacteria genera, including Geodermatophilus, Modestobacter and Sporichthya, were also identified. While complementary culture-dependent studies isolated a number of Nocardia and Pseudonocardia species, the majority of the cultured isolates (> 80%) were Streptomyces species - although phylotypes affiliated to the genus Streptomyces were detected at a low frequency in the metagenomic study. This study confirms that Antarctic Dry Valley desert soil harbours highly diverse actinobacterial communities and suggests that many of the phylotypes identified may represent novel, uncultured species. |
类型 | Article |
语种 | 英语 |
国家 | South Africa ; Australia ; New Zealand |
收录类别 | SCI-E |
WOS记录号 | WOS:000263755700003 |
WOS关键词 | RIBOSOMAL-RNA GENE ; SP-NOV. ; PSYCHROPHILIC BACTERIUM ; SEQUENCE ALIGNMENT ; MAT SAMPLE ; DIVERSITY ; AMPLIFICATION ; MARINE ; MODESTOBACTER ; ENVIRONMENTS |
WOS类目 | Microbiology |
WOS研究方向 | Microbiology |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/160517 |
作者单位 | 1.Univ Western Cape, Inst Microbial Biotechnol & Metagenom, Dept Biotechnol, ZA-7535 Bellville, Cape Town, South Africa; 2.Univ Cape Town, Biotransformat & Tech Biol Grp, Dept Chem Engn, ZA-7701 Rondebosch, South Africa; 3.Univ Queensland, Adv Water Management Ctr, Brisbane, Qld, Australia; 4.Univ Waikato, Dept Biol Sci, Hamilton, New Zealand |
推荐引用方式 GB/T 7714 | Babalola, Olubukola O.,Kirby, Bronwyn M.,Le Roes-Hill, Marilize,et al. Phylogenetic analysis of actinobacterial populations associated with Antarctic Dry Valley mineral soils[J],2009,11(3):566-576. |
APA | Babalola, Olubukola O..,Kirby, Bronwyn M..,Le Roes-Hill, Marilize.,Cook, Andrew E..,Cary, S. Craig.,...&Cowan, Don A..(2009).Phylogenetic analysis of actinobacterial populations associated with Antarctic Dry Valley mineral soils.ENVIRONMENTAL MICROBIOLOGY,11(3),566-576. |
MLA | Babalola, Olubukola O.,et al."Phylogenetic analysis of actinobacterial populations associated with Antarctic Dry Valley mineral soils".ENVIRONMENTAL MICROBIOLOGY 11.3(2009):566-576. |
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