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DOI | 10.1038/nprot.2008.136 |
High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry | |
Hong, Sun Pyo1; Shin, Soo-Kyung1; Lee, Eun Hee2; Kim, Eun Ok1; Il Ji, Seung1; Chung, Hyun Jae1; Park, Sun Nie3; Yoo, Wangdon1; Folk, William R.4; Kim, Soo-Ok1 | |
通讯作者 | Kim, Soo-Ok |
来源期刊 | NATURE PROTOCOLS
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ISSN | 1754-2189 |
EISSN | 1750-2799 |
出版年 | 2008 |
卷号 | 3期号:9页码:1476-1484 |
英文摘要 | We describe a matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF) mass spectrometry (MS)-based assay for human papillomavirus (HPV) genotyping-the restriction fragment mass polymorphism (RFMP) assay, which is based on mass measurement of genotype-specific oligonucleotide fragments generated by TypeIIS restriction endonuclease cleavage after recognition sites have been introduced by PCR amplification. The use of a TypeIIS restriction enzyme makes the RFMP assay independent of sequence and applicable to a wide variety of HPV genotypes, because these enzymes have cleavage sites at a fixed distance from their recognition sites. After PCR amplification, samples are subjected to restriction enzyme digestion with FokI and BtsCI and desalting using Oasis purification plates, followed by analysis by MALDI-TOF MS. Overall, the protocol is simple, takes similar to 4-4.5 h and can accurately detect and identify at least 74 different HPV genotypes. |
类型 | Article |
语种 | 英语 |
国家 | South Korea ; USA |
收录类别 | SCI-E |
WOS记录号 | WOS:000266108100005 |
WOS关键词 | CHRONIC HEPATITIS-B ; SINGLE-NUCLEOTIDE POLYMORPHISMS ; MONITORING DRUG-RESISTANCE ; SHORT DNA FRAGMENTS ; LINE PROBE ASSAY ; ADEFOVIR DIPIVOXIL ; LAMIVUDINE THERAPY ; CERVICAL-CANCER ; HPV TYPES ; C VIRUS |
WOS类目 | Biochemical Research Methods |
WOS研究方向 | Biochemistry & Molecular Biology |
资源类型 | 期刊论文 |
条目标识符 | http://119.78.100.177/qdio/handle/2XILL650/158637 |
作者单位 | 1.GeneMatrix Inc, R&D Ctr, Yongin 446913, South Korea; 2.Green Cross Reference Lab, Dept Lab Med, Yongin 446913, South Korea; 3.Natl Inst Toxicol Res, Korea Food & Drug Adm, Dept Toxicol Res, Seoul 122704, South Korea; 4.Univ Missouri, Dept Biochem, Columbia, MO 65201 USA |
推荐引用方式 GB/T 7714 | Hong, Sun Pyo,Shin, Soo-Kyung,Lee, Eun Hee,et al. High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry[J],2008,3(9):1476-1484. |
APA | Hong, Sun Pyo.,Shin, Soo-Kyung.,Lee, Eun Hee.,Kim, Eun Ok.,Il Ji, Seung.,...&Kim, Soo-Ok.(2008).High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry.NATURE PROTOCOLS,3(9),1476-1484. |
MLA | Hong, Sun Pyo,et al."High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry".NATURE PROTOCOLS 3.9(2008):1476-1484. |
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