Arid
DOI10.1038/nprot.2008.136
High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry
Hong, Sun Pyo1; Shin, Soo-Kyung1; Lee, Eun Hee2; Kim, Eun Ok1; Il Ji, Seung1; Chung, Hyun Jae1; Park, Sun Nie3; Yoo, Wangdon1; Folk, William R.4; Kim, Soo-Ok1
通讯作者Kim, Soo-Ok
来源期刊NATURE PROTOCOLS
ISSN1754-2189
EISSN1750-2799
出版年2008
卷号3期号:9页码:1476-1484
英文摘要

We describe a matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF) mass spectrometry (MS)-based assay for human papillomavirus (HPV) genotyping-the restriction fragment mass polymorphism (RFMP) assay, which is based on mass measurement of genotype-specific oligonucleotide fragments generated by TypeIIS restriction endonuclease cleavage after recognition sites have been introduced by PCR amplification. The use of a TypeIIS restriction enzyme makes the RFMP assay independent of sequence and applicable to a wide variety of HPV genotypes, because these enzymes have cleavage sites at a fixed distance from their recognition sites. After PCR amplification, samples are subjected to restriction enzyme digestion with FokI and BtsCI and desalting using Oasis purification plates, followed by analysis by MALDI-TOF MS. Overall, the protocol is simple, takes similar to 4-4.5 h and can accurately detect and identify at least 74 different HPV genotypes.


类型Article
语种英语
国家South Korea ; USA
收录类别SCI-E
WOS记录号WOS:000266108100005
WOS关键词CHRONIC HEPATITIS-B ; SINGLE-NUCLEOTIDE POLYMORPHISMS ; MONITORING DRUG-RESISTANCE ; SHORT DNA FRAGMENTS ; LINE PROBE ASSAY ; ADEFOVIR DIPIVOXIL ; LAMIVUDINE THERAPY ; CERVICAL-CANCER ; HPV TYPES ; C VIRUS
WOS类目Biochemical Research Methods
WOS研究方向Biochemistry & Molecular Biology
资源类型期刊论文
条目标识符http://119.78.100.177/qdio/handle/2XILL650/158637
作者单位1.GeneMatrix Inc, R&D Ctr, Yongin 446913, South Korea;
2.Green Cross Reference Lab, Dept Lab Med, Yongin 446913, South Korea;
3.Natl Inst Toxicol Res, Korea Food & Drug Adm, Dept Toxicol Res, Seoul 122704, South Korea;
4.Univ Missouri, Dept Biochem, Columbia, MO 65201 USA
推荐引用方式
GB/T 7714
Hong, Sun Pyo,Shin, Soo-Kyung,Lee, Eun Hee,et al. High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry[J],2008,3(9):1476-1484.
APA Hong, Sun Pyo.,Shin, Soo-Kyung.,Lee, Eun Hee.,Kim, Eun Ok.,Il Ji, Seung.,...&Kim, Soo-Ok.(2008).High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry.NATURE PROTOCOLS,3(9),1476-1484.
MLA Hong, Sun Pyo,et al."High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry".NATURE PROTOCOLS 3.9(2008):1476-1484.
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