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George VI Ice Shelf is the largest ice shelf on the western side of the Antarctic Peninsula and its northern margin marks the southern most latitudinal limit of recent ice shelf retreat. As part of a project to reconstruct the long-term (Holocene) history of George VI Ice Shelf we studied two epishelf lakes impounded by the ice shelf at Ablation Point, on the east coast of Alexander Island. These lakes, Moutonnee and Ablation, are stratified water bodies with a lower marine layer and an upper freshwater layer. To determine if their sediment records could be used to detect past changes in the presence or absence of the ice shelf it was necessary to describe their present-day limnology and sedimentology. We measured water column chemistry and sampled the water column and sediments of the lakes along vertical and horizontal transects. We analysed these samples for diatoms, stable isotopes (delta(18)O, delta(2)H, delta(13)C(DIC), delta(13)C(org)), geochemistry (TOC, TN, C/N ratios) and physical sedimentology (grain-size). This was supplemented by chemical and biological reference data from the catchments. Results showed that the water columns of both lakes are nutrient limited and deficient in phytoplankton. Benthic productivity is low and decreases with depth. Comparison of water column chemistry with an earlier survey shows a net increase in the thickness of the freshwater layer in Moutonnee Lake between 1973 and 2001, which could indicate that George VI Ice Shelf has thinned during this period. However, a similar trend was not observed in Ablation Lake (5 km to the north) and an alternative explanation is that the changes are a seasonal phenomena. Data from the surface sediment transects identified a number of proxies that respond to the present day stratification of the water column including diatom species composition, stable isotopes and geochemistry, particularly in Moutonnee Lake. Collectively these data have been used to develop a conceptual model for determining past ice shelf configuration in epishelf lakes. Specifically, periods of past ice shelf loss, and the removal of the ice dam, would see the present stratified epishelf lake replaced by a marine embayment. It is suggested that this change would leave a clear signature in the lake sediment record, notably the deposition of an exclusively marine biological assemblage, increased ice rafted debris and delta(13)C(org) values that are indicative of marine derived organic matter.