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A reference transcriptome for walnut anthracnose pathogen, Ophiognomonia leptostyla, guides the discovery of candidate virulence genes 期刊论文
发表期刊: FUNGAL GENETICS AND BIOLOGY. 出版年: 2023, 卷号: 169
作者:  Khelghatibana, Fatemeh;  Javan-Nikkhah, Mohammad;  Safaie, Naser;  Sobhani, Ahmad;  Shams, Somayeh;  Sari, Ehsan
收藏  |  浏览/下载：16/0  |  提交时间：2024/09/29
Ophiognomonia leptostyla  RNA-seq  De novo transcriptome assembly  K-means clustering  Candidate effector  CAZy  Juglans regia (cv. Chandler)  
Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed 期刊论文
发表期刊: BMC GENOMICS. 出版年: 2020, 卷号: 21, 期号: 1
作者:  Liu, Xi;  Herault, Frederic;  Diot, Christian;  Corre, Erwan
收藏  |  浏览/下载：7/0  |  提交时间：2021/01/07
RNA sequencing  Interspecific hybrids  De novo transcriptome assembly  Gene expression  Liver steatosis  
Compacting and correcting Trinity and Oases RNA - Seq de novo assemblies 期刊论文
发表期刊: PEERJ. 出版年: 2017, 卷号: 5
作者:  Cabau, Cedric;  Escudie, Frederic;  Djari, Anis;  Guiguen, Yann;  Bobe, Julien;  Klopp, Christophe
收藏  |  浏览/下载：4/0  |  提交时间：2019/11/29
RNA-Seq  De novo assembly  Compaction  Correction  Quality assessment  
Transcriptome sequencing reveals high isoform diversity in the ant Formica exsecta 期刊论文
发表期刊: PEERJ. 出版年: 2017, 卷号: 5
作者:  Dhaygude, Kishor;  Trontti, Kalevi;  Paviala, Jenni;  Morandin, Claire;  Wheat, Christopher;  Sundstrom, Liselotte;  Helantera, Heikki
收藏  |  浏览/下载：9/0  |  提交时间：2019/11/29
Pool-seq  RNA-sequencing  Ants  Transcriptome de novo assembly  Hymenoptera  Transcriptomics  
Tools for building de novo transcriptome assembly 期刊论文
发表期刊: CURRENT PLANT BIOLOGY. 出版年: 2017, 卷号: 2021-11-12, 页码: 41-45
作者:  Geniza, Matthew;  Jaiswal, Pankaj
收藏  |  浏览/下载：5/0  |  提交时间：2021/01/08
Transcriptiome  De novo assembly  Gene expression  RNA-Seq  Differential gene expression  Plant gene expression  Plant Ontology  Gene Ontology  De novo transcriptome assembly  Genome annotation  Genetic marker identification  Plant Reactome  Velvet Oases  SPAdes  Trinity  BinPacker  RNA QUAST  TransRate  CD-HIT-ES  
Reducing the number of artifactual repeats in de novo assembly of RNA-Seq data by optimizing the assembly pipeline 期刊论文
发表期刊: GENE REPORTS. 出版年: 2017, 卷号: 9, 页码: 7-12
作者:  Lee, Wei-Kang;  Zainuddin, Nur Afiza Mohd;  Teh, Hui-Ying;  Lim, Yi-Yi;  Jaafar, Mohd Uzair;  Khoo, Jia-Shiun;  Ghazali, Ahmad-Kamal;  Namasivayam, Parameswari;  Abdullah, Janna Ong;  Ho, Chai-Ling
收藏  |  浏览/下载：42/0  |  提交时间：2021/01/08
De novo assembly  Direct repeat  Inverted repeat  RNA-Seq  Transcriptome  
Genome-wide transcriptional and physiological responses to drought stress in leaves and roots of two willow genotypes 期刊论文
发表期刊: BMC PLANT BIOLOGY. 出版年: 2015, 卷号: 15
作者:  Pucholt, Pascal;  Sjodin, Per;  Weih, Martin;  Ronnberg-Wastljung, Ann Christin;  Berlin, Sofia
收藏  |  浏览/下载：10/0  |  提交时间：2019/11/29
Drought stress  Response to drought  RNA-seq  De novo assembly  Salix  Differentially expressed genes  Candidate genes  
Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome 期刊论文
发表期刊: BMC GENOMICS. 出版年: 2015, 卷号: 16
作者:  Visser, Erik A.;  Wegrzyn, Jill L.;  Steenkmap, Emma T.;  Myburg, Alexander A.;  Naidoo, Sanushka
收藏  |  浏览/下载：14/0  |  提交时间：2019/11/29
Pinus patula  De novo transcriptome assembly  Genome guided transcriptome assembly  RNA-seq  
Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance 期刊论文
发表期刊: BMC GENOMICS. 出版年: 2015, 卷号: 16
作者:  Diray-Arce, Joann;  Clement, Mark;  Gul, Bilquees;  Khan, M. Ajmal;  Nielsen, Brent L.
收藏  |  浏览/下载：14/0  |  提交时间：2019/11/29
Halophytes  Suaeda  RNA-seq  Differential expression  Transcriptome profiling  De novo assembly  Transcriptome  Salt tolerance  
Shoot transcriptome of the giant reed, Arundo donax 期刊论文
发表期刊: DATA IN BRIEF. 出版年: 2015, 卷号: 3, 页码: 1-6
作者:  Barrero, Roberto A.;  Guerrero, Felix D.;  Moolhuijzen, Paula;  Goolsby, John A.;  Tidwell, Jason;  Bellgard, Stanley E.;  Bellgard, Matthew I.
收藏  |  浏览/下载：17/0  |  提交时间：2021/01/08
Arundo donax  Giant reed  Shoot  Transcriptome  RNA de novo assembly  RNA-Scq